PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G186600.1
Common NamePOPTR_0002s18770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 507aa    MW: 54489.4 Da    PI: 7.6845
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G186600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30266324259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrC+++ gCpv+k+v+r+aed++++++tYeg+Hnh+
  Potri.002G186600.1 266 SDGCQWRKYGQKMAKGNPCPRAYYRCSMTvGCPVRKQVQRCAEDKTILITTYEGNHNHP 324
                         7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-33250326IPR003657WRKY domain
SuperFamilySSF1182901.7E-27258326IPR003657WRKY domain
PROSITE profilePS5081130.079260326IPR003657WRKY domain
SMARTSM007742.1E-36265325IPR003657WRKY domain
PfamPF031062.3E-26267324IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDQQGRELVF MHSGDFLRQN PGVSDHLNDY SSGDHAKPTM KEVDFFSTDR NGKSPSEHQE  60
MKINIGSSCL VDSSLNTGLN LSTSSSGISI IANAKEPNDN ELRVLRGELG RQHDENKKLR  120
SLLDQITKSY KDLQAQLLVA MQKQTQGCRV EQKGELNDTP TPVMSAQLLM DPRPSATLDA  180
NIEPSVSYDK THEMLVSPTN TMETKSQISG KRASIGDSNI DQTSQSLGSP KSPRLEEEKP  240
NEQVPEVPFR KARVSVRARS EAPLISDGCQ WRKYGQKMAK GNPCPRAYYR CSMTVGCPVR  300
KQVQRCAEDK TILITTYEGN HNHPLPPAAT VMANTTSAAA TMLLSGSTSS RESLSSSSGF  360
YPSLPYASTM ATISASAPFP TITLDLTNGP NTTMPFPCTS PSPVTFPFPL HGCPQLPGNP  420
MYVAPKLPAI PSVQLGQRHG SMVETVTAAI ASDPNFSAAL AAAISTCMGT PRSRDGSNNL  480
STPSVIPGLP GSPVQIPQSC TTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21252328176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G186600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302808.10.0probable WRKY transcription factor 47
TrEMBLB9GTA40.0B9GTA4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.12e-90WRKY family protein