PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G185900.1 | ||||||||
Common Name | POPTR_0002s18700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 465aa MW: 51818.6 Da PI: 7.1384 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G g+W+++++ g+ R++k+c++rw +yl Potri.002G185900.1 14 KGLWSPEEDEKLLSHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.2 | 1.6e-12 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Potri.002G185900.1 67 RGTFSHLEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.811 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.705 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-11 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-7 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLSHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SHLEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLKQRG 120 IDPVTHKPLS EVEDGEDKNP AASRNQDKAS AVSNTELNLL KADHSKPLGA NLQEKRSSSI 180 SPHGNQLERE STSSFKAMNE NNNNTNDHGN NNLMTPTSNK DFFFDRFTAF LHEGSTSNCP 240 PSGFVGHFPL QQLNYASNAR LATNSIPSLW LSQTSKAFGM NCEFSSTMIP SIPPPAVTSS 300 FLSSSMGYKP SITVPPDNPS LPSFTTNSYR PWETGAPSNN SNSSTGSNGS TELQSNSSFF 360 ENTIFSWGLG DCSSTEKEAQ NHLIGSQQED IRWPEYLQNP LLMAASLQNQ NQQSLYNEIK 420 TETHLLTENP SGMWPDNQQE QEPLQNPDIC PKDMQRITAS YGYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G185900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970784 | 0.0 | AB970784.1 Populus nigra PniMYB055 mRNA for MYB transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302702.1 | 0.0 | transcription factor MYB61 | ||||
TrEMBL | B9GRW7 | 0.0 | B9GRW7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s18700.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 3e-96 | myb domain protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G185900.1 |
Entrez Gene | 7478831 |