PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G182400.2
Common NamePOPTR_0002s18320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 490aa    MW: 54744.5 Da    PI: 4.6377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G182400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1324.2e-41321503128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         +G+rF+Ptdeel+++yLk+k+ g++le   +i+ev+++k+ePwdLp         wyfF++rd ky++++r+nr tk+g+Wk tgk+ +v+
  Potri.002G182400.2  32 VGYRFRPTDEELISNYLKPKLLGDDLEDLLIIAEVRVCKHEPWDLP--------VWYFFCPRDLKYSNSRRSNRRTKAGFWKPTGKTIKVK 114
                         7************************999899**************9........6***********************************9 PP

                 NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +k ++e++g+k+tLvfy+  +pk+e+t W++hey++
  Potri.002G182400.2 115 AKrNKEVIGTKRTLVFYRSASPKAERTAWIIHEYEV 150
                         9867888***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.19230171IPR003441NAC domain
SuperFamilySSF1019411.26E-4330171IPR003441NAC domain
PfamPF023654.5E-2532149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAFFPVLGRG MNSKIQSVME NPTDGMPSAP AVGYRFRPTD EELISNYLKP KLLGDDLEDL  60
LIIAEVRVCK HEPWDLPVWY FFCPRDLKYS NSRRSNRRTK AGFWKPTGKT IKVKAKRNKE  120
VIGTKRTLVF YRSASPKAER TAWIIHEYEV FVSDSKLSNL GEYVLCKLKK KLDEKTSKGV  180
PKNHTASTSG FEAEPSCSMA SDFENPNRSE LTTNSACVES ESSHRLASDF EKPNSNELPT  240
NLAQEASESS HFSTTNNQNP NELMSNSAYY GNGLHHSMAT NFGNPNSNEL ISSSFYDGSG  300
VLHSMTSNYE IQYPNELISN SAYDGSGGLL HSMTSNYEIQ YPNELISNSA YDGSGGLLHS  360
MTSNYEIQYP NELIVNSAYN VSEQSHYMAS DSENQNPIET TYVSPYEYWL TASDFEDPLS  420
PLQPEGETGP SMEMPFQFTN CLLASDFENQ NIDKETDISA PVEGERSSPT VMPLDLENQN  480
PWGKIDVNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-293317120165NO APICAL MERISTEM PROTEIN
1ut4_B6e-293317120165NO APICAL MERISTEM PROTEIN
1ut7_A6e-293317120165NO APICAL MERISTEM PROTEIN
1ut7_B6e-293317120165NO APICAL MERISTEM PROTEIN
4dul_A6e-293317120165NAC domain-containing protein 19
4dul_B6e-293317120165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G182400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451078.10.0NAC domain-containing protein 91
TrEMBLA0A2K2BKS20.0A0A2K2BKS2_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-38NAC transcription factor-like 9