PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G182400.1
Common NamePOPTR_0002s18320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 500aa    MW: 55817.7 Da    PI: 4.6196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G182400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.22.9e-44321603128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +G+rF+Ptdeel+++yLk+k+ g++le   +i+ev+++k+ePwdLp k ++k+++  wyfF++rd ky++++r+nr tk+g+Wk tgk+ +
  Potri.002G182400.1  32 VGYRFRPTDEELISNYLKPKLLGDDLEDLLIIAEVRVCKHEPWDLPvKsEIKSDDAVWYFFCPRDLKYSNSRRSNRRTKAGFWKPTGKTIK 122
                         7************************999899**************96358888999*********************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v++k ++e++g+k+tLvfy+  +pk+e+t W++hey++
  Potri.002G182400.1 123 VKAKrNKEVIGTKRTLVFYRSASPKAERTAWIIHEYEV 160
                         *99867888***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-4730181IPR003441NAC domain
PROSITE profilePS5100546.89130181IPR003441NAC domain
PfamPF023657.5E-2532159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAFFPVLGRG MNSKIQSVME NPTDGMPSAP AVGYRFRPTD EELISNYLKP KLLGDDLEDL  60
LIIAEVRVCK HEPWDLPVKS EIKSDDAVWY FFCPRDLKYS NSRRSNRRTK AGFWKPTGKT  120
IKVKAKRNKE VIGTKRTLVF YRSASPKAER TAWIIHEYEV FVSDSKLSNL GEYVLCKLKK  180
KLDEKTSKGV PKNHTASTSG FEAEPSCSMA SDFENPNRSE LTTNSACVES ESSHRLASDF  240
EKPNSNELPT NLAQEASESS HFSTTNNQNP NELMSNSAYY GNGLHHSMAT NFGNPNSNEL  300
ISSSFYDGSG VLHSMTSNYE IQYPNELISN SAYDGSGGLL HSMTSNYEIQ YPNELISNSA  360
YDGSGGLLHS MTSNYEIQYP NELIVNSAYN VSEQSHYMAS DSENQNPIET TYVSPYEYWL  420
TASDFEDPLS PLQPEGETGP SMEMPFQFTN CLLASDFENQ NIDKETDISA PVEGERSSPT  480
VMPLDLENQN PWGKIDVNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-303318120165NO APICAL MERISTEM PROTEIN
1ut4_B5e-303318120165NO APICAL MERISTEM PROTEIN
1ut7_A5e-303318120165NO APICAL MERISTEM PROTEIN
1ut7_B5e-303318120165NO APICAL MERISTEM PROTEIN
4dul_A5e-303318120165NAC domain-containing protein 19
4dul_B5e-303318120165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G182400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451078.10.0NAC domain-containing protein 91
TrEMBLA0A2K2BKS20.0A0A2K2BKS2_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2834433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-43NAC transcription factor-like 9