PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G181900.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 28108.5 Da PI: 8.3208 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.2 | 1.3e-39 | 3 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p+G+rFhPt+ee++++yLk+k++g++ ++++i evd+y+ +Pw+Lp ++ k++++ wy+F++ d k++++kr++r tk+g+Wk+tgk + Potri.002G181900.2 3 PVGYRFHPTEEEIICYYLKHKMNGRNSLVDDHIGEVDLYRRDPWELPvsARKKSDDRVWYYFCRLDYKHSNSKRASRETKNGFWKSTGKVR 93 89************************999999***************5336667888********************************** PP NAM 91 evlsk.kgelvglkktLvfy.kg.rapkgektdWvmheyrl 128 ++++k ++e++g k+tLvf + +++k + t+Wv+he+++ Potri.002G181900.2 94 DIKAKrTNEVIGSKRTLVFQyRCpDSKKVVGTSWVIHEFHA 134 ***9867788*********733347777789********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.453 | 2 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-42 | 3 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-23 | 3 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAPVGYRFHP TEEEIICYYL KHKMNGRNSL VDDHIGEVDL YRRDPWELPV SARKKSDDRV 60 WYYFCRLDYK HSNSKRASRE TKNGFWKSTG KVRDIKAKRT NEVIGSKRTL VFQYRCPDSK 120 KVVGTSWVIH EFHAKTTTPD QRALVLCKLK HKADDSAANL PDDEGEPIRV MGSNVENNAV 180 LNNNQEVDAE LLQSLFDSHE AGFDFPFTLQ AQNHVQNNNQ EVRWSISYSN FYNIVFHVKH 240 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-22 | 3 | 133 | 16 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G181900.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451228.1 | 1e-166 | protein CUP-SHAPED COTYLEDON 3 isoform X4 | ||||
TrEMBL | A0A3N7EJH7 | 1e-161 | A0A3N7EJH7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s18280.1 | 1e-161 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 1e-38 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G181900.2 |