PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G181900.1 | ||||||||
Common Name | POPTR_0002s18280g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 40996.2 Da PI: 5.2705 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 125.9 | 3.3e-39 | 3 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p+G+rFhPt+ee++++yLk+k++g++ ++++i evd+y+ +Pw+Lp ++ k++++ wy+F++ d k++++kr++r tk+g+Wk+tgk + Potri.002G181900.1 3 PVGYRFHPTEEEIICYYLKHKMNGRNSLVDDHIGEVDLYRRDPWELPvsARKKSDDRVWYYFCRLDYKHSNSKRASRETKNGFWKSTGKVR 93 89************************999999***************5336667888********************************** PP NAM 91 evlsk.kgelvglkktLvfy.kg.rapkgektdWvmheyrl 128 ++++k ++e++g k+tLvf + +++k + t+Wv+he+++ Potri.002G181900.1 94 DIKAKrTNEVIGSKRTLVFQyRCpDSKKVVGTSWVIHEFHA 134 ***9867788*********733347777789********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.453 | 2 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-22 | 3 | 133 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-41 | 3 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAPVGYRFHP TEEEIICYYL KHKMNGRNSL VDDHIGEVDL YRRDPWELPV SARKKSDDRV 60 WYYFCRLDYK HSNSKRASRE TKNGFWKSTG KVRDIKAKRT NEVIGSKRTL VFQYRCPDSK 120 KVVGTSWVIH EFHAKTTTPD QRALVLCKLK HKADDSAANL PDDEGEPIRV MGSNVENNAV 180 LNNNQEVDAE LPQSLFDSHD VGFNFPFALQ AQNHVQNNNQ EVDAELLQSL FDSHEAGFDF 240 PFTLQAQNHV QNNNQEVDAE QLQSLFDSHE AGFDFPLALQ PQNLVQNFLS DEEDIDFADS 300 LLNDYPPTPR SSSNAYVLDT SDRETYLAYG ESPNLYGGHG SSRAYQRKQR AHCDDTLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-21 | 3 | 133 | 16 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G181900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386672.1 | 0.0 | NAC domain-containing protein 62 isoform X1 | ||||
Refseq | XP_024451224.1 | 0.0 | NAC domain-containing protein 62 isoform X1 | ||||
Refseq | XP_024451225.1 | 0.0 | NAC domain-containing protein 62 isoform X1 | ||||
TrEMBL | A0A3N7EJH7 | 0.0 | A0A3N7EJH7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s18280.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14584 | 7 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 3e-38 | NAC domain containing protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G181900.1 |
Entrez Gene | 18096406 |