PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.002G180800.4 | ||||||||
Common Name | POPTR_0002s18190g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 769aa MW: 83888.2 Da PI: 6.481 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Potri.002G180800.4 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.28E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.091 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.4E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 769 aa Download sequence Send to blast |
MDTYSAGEDL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAVAKG VPIGKALEID IPPPRPKRKP SNPYPRKTGV GPPASQAGAK 120 DGKLLTSTSS PHCRKVLDLE KEPRPEKPNG DERPTNAKEN QDDNCSEVFT LLQEAHCSSV 180 ASVNKNCVPA LEVLKKTSSF REFVPSPKKG NHDACNESFI TVEHEANQKL DSSDANQTVL 240 DNGTVKASKS ENSCSLHEIL FQQKKSDDFI GSLPTDEMKA MQNYPRHVPV HVLDGSLGTC 300 METPSDLSFQ DSMFHPVGDI PACPILYSHP TGSTTTDHPT NLPRSSMHQS FPFFPPPFTP 360 THHNQDDYRS FLHISSTFSS PVVSTLLQNP AAHAAASFAA TFWPYGNVES SADSPACAQE 420 GFQSGQINSA PSMAAIAAAT VAAATAWWAA HGLLPICAPL HTAFACPPAS ATAIQSADTD 480 QVPPAKPERK ETTPDNPPLQ GQIQDLEHSE AVQAQNSASK PPTLSSSDSE ESGGTKLNTA 540 PKVTDHELNS KAPEVQDSGK TKSRKQVDRS SCGSNTPSSS EIETDALEKN EKGKEEPKEA 600 DANHPASELN CRRSRSSSSM SDSWKEVSEE GRLAFQALFT RERLPQSFSP PHDLKSKMHQ 660 KEDTEEKKNP DEKDGDASLL DLNSKTWGYC SGYQEGEKNA VVPRCVNDGE EGLLTIGLGH 720 GNLKAHLTGF KPYKRCSLEA KESRMGTTGG QGEEKGPKRL RLEREASV* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00654 | PBM | Transfer from LOC_Os08g06110 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.002G180800.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB429410 | 0.0 | AB429410.1 Populus nigra PnLHY1 mRNA for transcription factor LHY, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386664.1 | 0.0 | protein LHY | ||||
Refseq | XP_024451481.1 | 0.0 | protein LHY | ||||
TrEMBL | B9GRS2 | 0.0 | B9GRS2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s18190.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-119 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.002G180800.4 |
Entrez Gene | 7478808 |