PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G178700.1
Common NamePtVNS10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 382aa    MW: 43549.2 Da    PI: 5.9326
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G178700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.3e-51151431128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPt+eel+++yL+kkv+ +k++l evi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+ g+r+nrat++g+Wkatg+
  Potri.002G178700.1  15 VPPGFRFHPTEEELLDYYLRKKVSYEKIDL-EVIRDVDLNKLEPWDIQErcKIGTaPQNDWYFFSHKDKKYPAGTRTNRATAAGFWKATGR 104
                         69****************************.99**************962433333556******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         dk ++  +g+ vg++ktLvfykgrap+g+k+dW+mheyrl
  Potri.002G178700.1 105 DKVIYG-TGKRVGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143
                         *****9.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-589173IPR003441NAC domain
PROSITE profilePS5100557.115173IPR003441NAC domain
PfamPF023651.6E-2716143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTENMSISVN GQSQVPPGFR FHPTEEELLD YYLRKKVSYE KIDLEVIRDV DLNKLEPWDI  60
QERCKIGTAP QNDWYFFSHK DKKYPAGTRT NRATAAGFWK ATGRDKVIYG TGKRVGMRKT  120
LVFYKGRAPH GQKSDWIMHE YRLDDNPSET NVSNVMGEAA QEDGWVVCRI FKKKNLNKTL  180
DRAMSSSPIT ADTRNQTLSS CNEGSLDQML HYMGSTCKEE NEADNSARYL WPIDTAINHV  240
HHDNRFMELP SLESPNSTSS LNFYQSMITE NEGSITNQVS YPLDSGLNNW VALDSLVASQ  300
INGQAETSRQ SACFPNDPTM TYCTPTDLHH DLQFPTLRSS FSFPSNRSYH ETQDYNSEID  360
LWNFSSRSSS DPQWHLPNTS V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-501217514167NO APICAL MERISTEM PROTEIN
1ut4_B9e-501217514167NO APICAL MERISTEM PROTEIN
1ut7_A9e-501217514167NO APICAL MERISTEM PROTEIN
1ut7_B9e-501217514167NO APICAL MERISTEM PROTEIN
3swm_A8e-501217517170NAC domain-containing protein 19
3swm_B8e-501217517170NAC domain-containing protein 19
3swm_C8e-501217517170NAC domain-containing protein 19
3swm_D8e-501217517170NAC domain-containing protein 19
3swp_A8e-501217517170NAC domain-containing protein 19
3swp_B8e-501217517170NAC domain-containing protein 19
3swp_C8e-501217517170NAC domain-containing protein 19
3swp_D8e-501217517170NAC domain-containing protein 19
4dul_A9e-501217514167NAC domain-containing protein 19
4dul_B9e-501217514167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G178700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5999410.0AB599941.1 Populus trichocarpa PtVNS10 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450691.10.0NAC domain-containing protein 43
SwissprotQ84WP61e-134NAC43_ARATH; NAC domain-containing protein 43
TrEMBLF1T1150.0F1T115_POPTR; NAC family protein
STRINGPOPTR_0002s17950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30313374
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-127NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ohtani M, et al.
    A NAC domain protein family contributing to the regulation of wood formation in poplar.
    Plant J., 2011. 67(3): p. 499-512
    [PMID:21649762]
  3. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  4. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  5. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  6. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  7. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  8. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]