PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G177000.1 | ||||||||
Common Name | POPTR_0002s17760g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21746 Da PI: 10.8283 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 107 | 149 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT +E+el++ + +++G + +I+r++ k++ l q+k++ + Potri.002G177000.1 107 AWTDQEHELFLMGLRKYGRANYGKISRKFVKTKNLQQVKNHAN 149 7*****************99*********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 12.107 | 103 | 156 | IPR017884 | SANT domain |
SMART | SM00717 | 2.3E-6 | 104 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-6 | 107 | 152 | No hit | No description |
Pfam | PF00249 | 2.5E-6 | 107 | 149 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-6 | 107 | 147 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.44E-9 | 108 | 152 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MENQSDASKS PLSPPNPKEK HIRFNSPPPP PPPPSKINIE GPHLPMIKDN VSCLRGTVEP 60 ERRPNMNGKN KNIDFNMHRK MENFEKMISE GVKKFVKEYY KKNPDEAWTD QEHELFLMGL 120 RKYGRANYGK ISRKFVKTKN LQQVKNHANL VFRISGQLLK SSTRKGPNTK VGVAKSDPAA 180 ANIASTSQRR GA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G177000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023465.1 | 3e-57 | PREDICTED: transcription factor MYB1R1-like | ||||
TrEMBL | A0A2K2BKE4 | 1e-139 | A0A2K2BKE4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s17760.1 | 1e-123 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28213 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-11 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G177000.1 |
Entrez Gene | 7478792 |