PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G176300.1 | ||||||||
Common Name | POPTR_0002s17680g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 239aa MW: 27282.4 Da PI: 4.7426 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1.1e-19 | 30 | 84 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le++Fe++ + +++ +LAk+lgL+ rqV +WFqN+Ra++k Potri.002G176300.1 30 KNKRRFSDEQIKSLESMFESETRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWK 84 67889*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.9 | 3.1e-39 | 31 | 122 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +krr+s+eq+k+LE++Fe+e++Lep++K++la+eLglqprqva+WFqn+RAR+k+kqlE+d++ L+++y++l+++ e+L+ke+++L +l+ Potri.002G176300.1 31 NKRRFSDEQIKSLESMFESETRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDFSILRANYNSLASRFETLKKEKQALVIQLQ 121 79************************************************************************************99987 PP HD-ZIP_I/II 93 e 93 + Potri.002G176300.1 122 K 122 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.97E-20 | 8 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-20 | 20 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.544 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-17 | 28 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.0E-17 | 30 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.91E-15 | 35 | 87 | No hit | No description |
PRINTS | PR00031 | 6.2E-6 | 57 | 66 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.2E-6 | 66 | 82 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.9E-15 | 86 | 127 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MFDGGEYSPS ATEPFSCMNG VTTSRKKKNK NKRRFSDEQI KSLESMFESE TRLEPRKKMQ 60 LAKELGLQPR QVAIWFQNKR ARWKSKQLER DFSILRANYN SLASRFETLK KEKQALVIQL 120 QKINDLMKKP GEEGECCGQG PAVNSIEGKS ENADTTMGES ETNPRLSIER PEHGLGVLSD 180 EDSSIKAEYF ELEEEPNLIS MVEPADGSLT SQEDWGSLDS DRLFDQSSSD YQWWDFWA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.5826 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G176300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU226615 | 0.0 | CU226615.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302659.1 | 1e-176 | homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | P46897 | 1e-76 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | B9GR61 | 1e-175 | B9GR61_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s17680.1 | 1e-175 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 6e-73 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G176300.1 |
Entrez Gene | 7497280 |
Publications ? help Back to Top | |||
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