PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G174300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 264aa    MW: 28908.9 Da    PI: 8.9399
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G174300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-392080262
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+
  Potri.002G174300.1 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 80
                        6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-271978IPR003851Zinc finger, Dof-type
PfamPF027011.9E-332278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1992478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEEMTSNTCG RPVLERKARP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE  60
GGSLRNVPVG GGSRKNKRST SSSVAASAAP SKLPDLNPPN LSHFSSQNPK SAHEGQDLNL  120
AFPAMQDSQG ISHYTEVAKT ENNNYNQHNS YSSPYTSSPI SALELLRSGI ASRGLNSFIP  180
TPMPDSNTLY SSGGFPLQEL KPTLSFSLDG LGSRYGVQEH NGRLLFPFGE LKQLSSTNEV  240
DQNKGQGTSS TGYWNGMFGG GSW*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G174300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451836.10.0dof zinc finger protein DOF2.5 isoform X3
RefseqXP_024451838.10.0dof zinc finger protein DOF2.5 isoform X4
RefseqXP_024451839.10.0dof zinc finger protein DOF2.5 isoform X5
RefseqXP_024451840.10.0dof zinc finger protein DOF2.5 isoform X5
SwissprotQ433854e-72DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A3N7ER211e-153A0A3N7ER21_POPTR; Uncharacterized protein
TrEMBLA0A3N7G3M31e-153A0A3N7G3M3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17490.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.44e-75Dof family protein