PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G173900.1
Common NamePOPTR_0002s17460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 286aa    MW: 32183.2 Da    PI: 9.4512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G173900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Potri.002G173900.1 14 RGPWTPREDALLTEYIQAHGEGHWRSLPKKSGLLRCGKSCRLRWMNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding544e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  Potri.002G173900.1  67 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 112
                         7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.641961IPR017930Myb domain
SuperFamilySSF466895.14E-3011108IPR009057Homeodomain-like
SMARTSM007179.1E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-241568IPR009057Homeodomain-like
CDDcd001671.56E-91661No hitNo description
PROSITE profilePS5129427.18262116IPR017930Myb domain
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002492.6E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2669116IPR009057Homeodomain-like
CDDcd001676.57E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRAPCCSKV GLRRGPWTPR EDALLTEYIQ AHGEGHWRSL PKKSGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNHWNT HLSKRLRSQG  120
TDPNTHKKLA EPGKREVRRR TSNSDKNTSN KKQSKSKAKP VPAEKHKVHL PKAVRFASLS  180
LPRNDSFASS TTTSLSPSQG RDQGYCFGTE LAVDVSWSNF KDCDNGVAFF VGDVDLDNGS  240
DLECQSLLPT TDTLEKLYEE YLQVLNTNDH QDQVELNSFA ESLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
1h8a_C3e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G173900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302644.10.0myb-related protein 308
TrEMBLB9GR370.0B9GR37_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-68myb domain protein 5