PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G168700.1
Common NamePOPTR_0002s17010g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 364aa    MW: 40939.2 Da    PI: 6.1384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G168700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.46e-28128189159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+e+ +++e+tY+g+H+++
  Potri.002G168700.1 128 LDDGHSWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRSDENHSIFEVTYRGRHTCK 189
                         59***************************98999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.873123186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-27123190IPR003657WRKY domain
SuperFamilySSF1182903.14E-25127190IPR003657WRKY domain
SMARTSM007748.7E-41128190IPR003657WRKY domain
PfamPF031064.0E-26129189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEKSMEWEQK TLVSELAQGK ELAKQLRNHL NPSSSLEARQ SLVEKILSSY EKALSVLNRG  60
ALVADQPKPT IGIMESPHSF SNSSPWSEVS DQDCKEEWNK DVNKKRKTQP RRTEQVKVCP  120
GTGLEGPLDD GHSWRKYGQK DILGANFPRG YYRCTHRHSQ GCLATKQVQR SDENHSIFEV  180
TYRGRHTCKQ ASTPPVASPS LENDFSKQSK YHSQQQHEEK PKPSKEISRH FGFDCNQVKN  240
EDLGSKDGIF PFFSFPCTSS GNENEENNIF TESMIENSFL GNFSPTFISS TTSESNYFSV  300
SPCHMNSFGI GSQNVQTQGC ELTTEKISAP TSVTNSPIRD LDISIDYVDF DTTFPFDNPE  360
FFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18128189869OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G168700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302620.10.0probable WRKY transcription factor 46 isoform X1
TrEMBLB9GQZ60.0B9GQZ6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-51WRKY DNA-binding protein 46