PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G168700.1 | ||||||||
Common Name | POPTR_0002s17010g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 364aa MW: 40939.2 Da PI: 6.1384 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.4 | 6e-28 | 128 | 189 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr+YYrCt++ gC ++k+v+rs+e+ +++e+tY+g+H+++ Potri.002G168700.1 128 LDDGHSWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRSDENHSIFEVTYRGRHTCK 189 59***************************98999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.873 | 123 | 186 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-27 | 123 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-25 | 127 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.7E-41 | 128 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-26 | 129 | 189 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEKSMEWEQK TLVSELAQGK ELAKQLRNHL NPSSSLEARQ SLVEKILSSY EKALSVLNRG 60 ALVADQPKPT IGIMESPHSF SNSSPWSEVS DQDCKEEWNK DVNKKRKTQP RRTEQVKVCP 120 GTGLEGPLDD GHSWRKYGQK DILGANFPRG YYRCTHRHSQ GCLATKQVQR SDENHSIFEV 180 TYRGRHTCKQ ASTPPVASPS LENDFSKQSK YHSQQQHEEK PKPSKEISRH FGFDCNQVKN 240 EDLGSKDGIF PFFSFPCTSS GNENEENNIF TESMIENSFL GNFSPTFISS TTSESNYFSV 300 SPCHMNSFGI GSQNVQTQGC ELTTEKISAP TSVTNSPIRD LDISIDYVDF DTTFPFDNPE 360 FFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-18 | 128 | 189 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00112 | ampDAP | Transfer from AT2G46400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G168700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302620.1 | 0.0 | probable WRKY transcription factor 46 isoform X1 | ||||
TrEMBL | B9GQZ6 | 0.0 | B9GQZ6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s17010.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 3e-51 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G168700.1 |
Entrez Gene | 7457389 |