PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G164900.1 | ||||||||
Common Name | POPTR_0002s16640g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 194aa MW: 21894 Da PI: 9.3052 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.7 | 2e-32 | 114 | 172 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg H+h+ Potri.002G164900.1 114 LDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGVHDHP 172 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-33 | 100 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-28 | 107 | 173 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.667 | 109 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 114 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 115 | 172 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEGHEAPPPP PQLPQLAPSP NPSYLLTPLL LPSSSLQYPS IIEPQVLPDI DWVGLLSGQS 60 QLGEKRPVME SASMVAENGA EEERGNKDEK KGGRMKKATR PRFAFQTRSA DDILDDGYRW 120 RKYGQKAVKN SKYPRSYYRC THHTCNVKKQ VQRLSKDTSI VVTTYEGVHD HPCEKLMETL 180 TPLLKQMQFL ARF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-25 | 102 | 171 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00317 | DAP | Transfer from AT2G46130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G164900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377439 | 0.0 | GQ377439.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301377.2 | 1e-143 | probable WRKY transcription factor 43 | ||||
Swissprot | Q8GY11 | 8e-55 | WRK43_ARATH; Probable WRKY transcription factor 43 | ||||
TrEMBL | B9GQD9 | 1e-142 | B9GQD9_POPTR; Uncharacterized protein | ||||
STRING | EOX95854 | 2e-93 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.1 | 3e-57 | WRKY DNA-binding protein 43 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G164900.1 |
Entrez Gene | 7457362 |
Publications ? help Back to Top | |||
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