PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G164400.1
Common NamePOPTR_0002s16590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 355aa    MW: 38846.6 Da    PI: 6.5969
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G164400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30169227259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+
  Potri.002G164400.1 169 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVTYTAEHNHP 227
                         79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30159229IPR003657WRKY domain
PROSITE profilePS5081135.049163229IPR003657WRKY domain
SuperFamilySSF1182904.58E-26166229IPR003657WRKY domain
SMARTSM007741.0E-36168228IPR003657WRKY domain
PfamPF031062.3E-25170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEDIDWDLHA VVRGCTTSTS TSTTATTTIN SNSNRNGTTS GYRSDYYPQY SCFSGFGSEQ  60
VGHLFSHPDP FETRNVIGEL DELYKPFFPK TQPLLYSPQA CTPISSFSSF ASFNKDLQTQ  120
PKQQQKKSQP KQSLAGSVTS SGNSHTPRSK RRKNQLKKVC QVPAEALSSD VWAWRKYGQK  180
PIKGSPYPRG YYRCSSSKGC LARKQVERNR SDPGMFIVTY TAEHNHPAPT HRNSLAGSTR  240
QKTSTPQAGT SNDSNKPSSP AQPTCSSPAT SLEDELLVQS TTDTELSREE KDITEDDDED  300
ELAGFSEIAV SDDFFAGLEE FVVPATGFFS DHFPASFGLP WHANNNAATA AGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-22153230280Disease resistance protein RRS1
5w3x_D3e-22153230280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G164400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386616.20.0WRKY transcription factor 22
TrEMBLA0A2I4KK730.0A0A2I4KK73_POPTR; WRKY family protein
TrEMBLA0A3N7EJ760.0A0A3N7EJ76_POPTR; Uncharacterized protein
STRINGPOPTR_0002s16590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-80WRKY family protein