PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G159300.2

Common Name

POPTR_0002s16070g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BES1

Protein Properties

Length: 562aa MW: 62393.3 Da PI: 5.0475

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G159300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	148.3	6.3e-46	75	214	1	133
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas 87 gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +gs+p +++a+ ss+s Potri.002G159300.2 75 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgGTSAAVTSSSS 165 6899***************************************************************9888999999733333333333 PP DUF822 88 ..aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133 +s++++ ++ +s ++ ve + +s+k + +p ps +d ++++ Potri.002G159300.2 166 hlVSQQTPPAsLRGVSPGYQTSVEYSTCSMKGVFMPNPSPYDLSASTQP 214 348888888878999************************98876644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.4E-39	77	208	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.11E-125	261	547	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.9E-143	264	548	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	5.4E-79	268	548	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-41	299	313	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-41	320	338	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-41	342	363	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	346	354	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00750	4.4E-41	435	457	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-41	508	527	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MATDIQKLIG TSEEDDDEEM DMDVKEEDDE DEENGGKNIA AQIMAGGGGG MASNNSDNQF 60 QHQQQFQEQV TTPAGGARRS RPLEEKERTK LRERHRRAIT ARILAGLRRH GNYNLRVRAD 120 INDVIAALAR EAGWVVLPDG TTFPSRSQGS RPAGGTSAAV TSSSSHLVSQ QTPPASLRGV 180 SPGYQTSVEY STCSMKGVFM PNPSPYDLSA STQPQIPAVV GEGGEQTESN LHIGGSMDII 240 NDKQIVDIPP IPKLPERDFA GTPFIPVYVM LPLGVINMKC ELVDPDDLLK QLKVLKSANV 300 DGIMVDCWWG IVEAHTPQEY NWSGYSRLFQ MVRELKLKLQ VVMSFHECGG NVGDDVCIPL 360 PHWVAEIGRS NPDIFFTDRE GRRNPECLSW GIDKERVLRG RTAVEVYFDY MRSFRAEFDE 420 CFADGIISMV EVGLGPCGEL RYPSCPVKHG WRYPGIGEFQ CYDQYLLKSL KKTAEARGHP 480 FWARGPDNAG FYNSQPHETG FFCDGGDYDG YYGRFFLNWY TRILVDHGDR VLSLAKLAFE 540 GTQIAVKVFI GGTRQPVMLL N*

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MATDIQKLIG TSEEDDDEEM DMDVKEEDDE DEENGGKNIA AQIMAGGGGG MASNNSDNQF  60
QHQQQFQEQV TTPAGGARRS RPLEEKERTK LRERHRRAIT ARILAGLRRH GNYNLRVRAD  120
INDVIAALAR EAGWVVLPDG TTFPSRSQGS RPAGGTSAAV TSSSSHLVSQ QTPPASLRGV  180
SPGYQTSVEY STCSMKGVFM PNPSPYDLSA STQPQIPAVV GEGGEQTESN LHIGGSMDII  240
NDKQIVDIPP IPKLPERDFA GTPFIPVYVM LPLGVINMKC ELVDPDDLLK QLKVLKSANV  300
DGIMVDCWWG IVEAHTPQEY NWSGYSRLFQ MVRELKLKLQ VVMSFHECGG NVGDDVCIPL  360
PHWVAEIGRS NPDIFFTDRE GRRNPECLSW GIDKERVLRG RTAVEVYFDY MRSFRAEFDE  420
CFADGIISMV EVGLGPCGEL RYPSCPVKHG WRYPGIGEFQ CYDQYLLKSL KKTAEARGHP  480
FWARGPDNAG FYNSQPHETG FFCDGGDYDG YYGRFFLNWY TRILVDHGDR VLSLAKLAFE  540
GTQIAVKVFI GGTRQPVMLL N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bfn_A	1e-106	264	554	11	300	BETA-AMYLASE
1q6c_A	1e-106	264	554	11	300	beta-amylase
1q6g_A	1e-106	264	554	11	300	beta-amylase
1uko_A	1e-106	264	554	11	300	Beta-amylase
1uko_B	1e-106	264	554	11	300	Beta-amylase
1uko_C	1e-106	264	554	11	300	Beta-amylase
1uko_D	1e-106	264	554	11	300	Beta-amylase
1ukp_A	1e-106	264	554	11	300	Beta-amylase
1ukp_B	1e-106	264	554	11	300	Beta-amylase
1ukp_C	1e-106	264	554	11	300	Beta-amylase
1ukp_D	1e-106	264	554	11	300	Beta-amylase
1v3i_A	1e-106	264	554	11	300	Beta-amylase
1wdp_A	1e-106	264	554	11	300	Beta-amylase
1wdq_A	1e-106	264	554	11	300	Beta-amylase
1wdr_A	1e-106	264	554	11	300	Beta-amylase
1wds_A	1e-106	264	554	11	300	Beta-amylase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.11866	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G159300.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302585.2	0.0	beta-amylase 7 isoform X3
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A3N7EJ36	0.0	A0A3N7EJ36_POPTR; Beta-amylase
STRING	POPTR_0002s16070.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Potri.002G159300.2
Entrez Gene	7461768

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]