PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G154200.1
Common NamePOPTR_0002s15560g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 209aa    MW: 23520 Da    PI: 6.0222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G154200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.18e-45121402127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         p+G+ FhPtdeelv+++Lk k+ g   ++ ++i+ev+++++ePw+Lp  +++++++ e+yfFs+ + ky++++r+nr+t +gyWk tg+d+
  Potri.002G154200.1  12 PVGYGFHPTDEELVNHFLKLKMIGGYDHVVSTIAEVNVCNYEPWELPglSAIQSNDPECYFFSRPNYKYSKSQRANRTTGAGYWKGTGRDR 102
                         89********************9999999899***************6448888889********************************** PP

                 NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++++k +ge++ +kktLvfy+gr p+g++t+W+mhey+
  Potri.002G154200.1 103 TITAKsTGEQIATKKTLVFYNGRVPNGVRTNWIMHEYN 140
                         ***9988999***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-486158IPR003441NAC domain
PROSITE profilePS5100545.90111159IPR003441NAC domain
PfamPF023655.1E-2312140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTSSTTPFRS APVGYGFHPT DEELVNHFLK LKMIGGYDHV VSTIAEVNVC NYEPWELPGL  60
SAIQSNDPEC YFFSRPNYKY SKSQRANRTT GAGYWKGTGR DRTITAKSTG EQIATKKTLV  120
FYNGRVPNGV RTNWIMHEYN PTFSFPNKRD FILYKLKKNP DDLPAFDEGE SSASNVDEED  180
SQLRAQLESF SGIDEGDYNL NSALHFSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-331014019144NAC domain-containing protein 19
3swm_B1e-331014019144NAC domain-containing protein 19
3swm_C1e-331014019144NAC domain-containing protein 19
3swm_D1e-331014019144NAC domain-containing protein 19
3swp_A1e-331014019144NAC domain-containing protein 19
3swp_B1e-331014019144NAC domain-containing protein 19
3swp_C1e-331014019144NAC domain-containing protein 19
3swp_D1e-331014019144NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}.
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G154200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826731e-149AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301328.11e-157protein NTM1-like 9
RefseqXP_024450979.11e-157protein NTM1-like 9
SwissprotF4JN353e-49NTL9_ARATH; Protein NTM1-like 9
TrEMBLB9GPV51e-155B9GPV5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15560.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Representative plantOGRP9281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-51NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]