PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G154100.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 575aa    MW: 64335.8 Da    PI: 4.5264
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G154100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.42.9e-19159054127
                 NAM  54 eekewyfFskrdkkyatgkr.knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                          ++ewyfF++rd ky++++r  nr+tk+gyWk t k k++++  +++++g+ ktL+fyk  +pk  +t W++ e+ 
  Potri.002G154100.4  15 ADQEWYFFCPRDLKYKKKSRlCNRKTKAGYWKLTCKIKPIMAGhTKKNIGVMKTLTFYKTARPKDARTGWMIYEFD 90 
                         689*************98883588*****************9867778**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.7081111IPR003441NAC domain
SuperFamilySSF1019412.22E-2215109IPR003441NAC domain
PfamPF023652.5E-101790IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MNSDFSSDKS IINLADQEWY FFCPRDLKYK KKSRLCNRKT KAGYWKLTCK IKPIMAGHTK  60
KNIGVMKTLT FYKTARPKDA RTGWMIYEFD IVTNSSLSKK GQYVLCRLEN RSDERIKKGE  120
QNHLMASVSV SEAVPGQSMT SDFENQNSSE MVVSLASDDS ELSHHMGSDS GNQNSSELTP  180
ARQVSELSHY MASDFRNQNS CKSGSNLAYD GSGSCHSTAF NSETQYRNQP TVGSVCIVNK  240
NHYMAFDLEN QNPNELLTVD SVYTVSKNHY MAPNELPTVD SAYTVSKNHY MAFDLENQNP  300
NELLTVDSVY TVSKNHYMAP NELPTVDSAY TVSNNHYMAF DSEYQNPNEL LTADSAYIVD  360
KNHYMAFDSE YQKPNELLTA DSVYDVSESQ YMPFDSENQN LNNINSISTY ENSLMASHGF  420
ENKNPPFPPE GECGTSVVMP FKFINQSTYD ESELSSLLAS DFGNQNLDKE INLSAFDEGE  480
WSSLTAIPSD FGNQNPSKKA DISTHEEGYS SYLTAPFSEN NLADVSLPDV SPELLAGALE  540
AIFEQKKSPN TVLQPPVCVE ESHSYMDYDT STST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-131711469171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G154100.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024449898.10.0uncharacterized protein LOC7494041 isoform X2
TrEMBLA0A2K2BJ960.0A0A2K2BJ96_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.37e-21NAC transcription factor-like 9