PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G154100.3 | ||||||||
Common Name | POPTR_0002s15550g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 534aa MW: 59937 Da PI: 4.6885 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.6 | 2.6e-19 | 15 | 90 | 54 | 127 |
NAM 54 eekewyfFskrdkkyatgkr.knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++ewyfF++rd ky++++r nr+tk+gyWk t k k++++ +++++g+ ktL+fyk +pk +t W++ e+ Potri.002G154100.3 15 ADQEWYFFCPRDLKYKKKSRlCNRKTKAGYWKLTCKIKPIMAGhTKKNIGVMKTLTFYKTARPKDARTGWMIYEFD 90 689*************98883588*****************9867778**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.708 | 1 | 111 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-22 | 15 | 109 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-10 | 17 | 90 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MNSDFSSDKS IINLADQEWY FFCPRDLKYK KKSRLCNRKT KAGYWKLTCK IKPIMAGHTK 60 KNIGVMKTLT FYKTARPKDA RTGWMIYEFD IVTNSSLSKK GQYVLCRLEN RSDERIKKGE 120 QNHLMASVSV SEAVPGQSMT SDFENQNSSE MVVSLASDDS ELSHHMGSDS GNQNSSELTP 180 ARQVSELSHY MASDFRNQNS CKSGSNLAYD GSGSCHSTAF NSETQYRNQP TVGSVCIVNK 240 NHYMAFDLEN QNPNELLTVD SVYTVSKNHY MAPNELPTVD SAYTVSKNHY MAFDLENQNP 300 NELLTVDSVY TVSKNHYMAP NELPTVDSAY TVSNNHYMAF DSEYQNPNEL LTADSAYIVD 360 KNHYMAFDSE YQKPNELLTA DSVYDVSESQ YMPFDSENQN LNNINSISTY ENSLMASHGF 420 ENKNPPFPPE GECGTSVVMP FKFINQSTYD ESELSSLLAS DFGNQNLDKE INLSAFDEGE 480 WSSLTAIPSD FGNQNPSKKA DISTHEEGYS SYLTAPFSEN NLADVSLPDV RIK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-13 | 17 | 114 | 69 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G154100.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182673 | 0.0 | AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024449898.1 | 0.0 | uncharacterized protein LOC7494041 isoform X2 | ||||
TrEMBL | A0A2K2BJ96 | 0.0 | A0A2K2BJ96_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s15550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 7e-21 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G154100.3 |
Entrez Gene | 7494041 |