PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G154100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 625aa    MW: 69914.5 Da    PI: 4.5691
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G154100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.12.4e-34121402127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkr.knratksgyWkatgkd 89 
                          +Gf+F+P+ eel+ +yL +k +g  +e    ++ev+++++ePwdLp k  ++  ++ewyfF++rd ky++++r  nr+tk+gyWk t k 
  Potri.002G154100.1  12 KAGFKFQPSPEELIINYLVPKSRGGIVEG-VPMAEVNLCEHEPWDLPnKsIINLADQEWYFFCPRDLKYKKKSRlCNRKTKAGYWKLTCKI 101
                         68***********************9888.56**************95345666999*************98883588************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         k++++  +++++g+ ktL+fyk  +pk  +t W++ e+ 
  Potri.002G154100.1 102 KPIMAGhTKKNIGVMKTLTFYKTARPKDARTGWMIYEFD 140
                         ****9867778**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-378159IPR003441NAC domain
PROSITE profilePS5100539.6911161IPR003441NAC domain
PfamPF023653.0E-1813140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MANPISLMQL MKAGFKFQPS PEELIINYLV PKSRGGIVEG VPMAEVNLCE HEPWDLPNKS  60
IINLADQEWY FFCPRDLKYK KKSRLCNRKT KAGYWKLTCK IKPIMAGHTK KNIGVMKTLT  120
FYKTARPKDA RTGWMIYEFD IVTNSSLSKK GQYVLCRLEN RSDERIKKGE QNHLMASVSV  180
SEAVPGQSMT SDFENQNSSE MVVSLASDDS ELSHHMGSDS GNQNSSELTP ARQVSELSHY  240
MASDFRNQNS CKSGSNLAYD GSGSCHSTAF NSETQYRNQP TVGSVCIVNK NHYMAFDLEN  300
QNPNELLTVD SVYTVSKNHY MAPNELPTVD SAYTVSKNHY MAFDLENQNP NELLTVDSVY  360
TVSKNHYMAP NELPTVDSAY TVSNNHYMAF DSEYQNPNEL LTADSAYIVD KNHYMAFDSE  420
YQKPNELLTA DSVYDVSESQ YMPFDSENQN LNNINSISTY ENSLMASHGF ENKNPPFPPE  480
GECGTSVVMP FKFINQSTYD ESELSSLLAS DFGNQNLDKE INLSAFDEGE WSSLTAIPSD  540
FGNQNPSKKA DISTHEEGYS SYLTAPFSEN NLADVSLPDV SPELLAGALE AIFEQKKSPN  600
TVLQPPVCVE ESHSYMDYDT STST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-261116415171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G154100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301327.20.0NAC domain-containing protein 53 isoform X1
TrEMBLA0A2K2BJ930.0A0A2K2BJ93_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.27e-35NAC 014