PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G154000.1 | ||||||||
Common Name | POPTR_0002s15530g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 454aa MW: 51242.2 Da PI: 6.3838 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.7 | 1.1e-40 | 15 | 143 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p+GfrFhPt eel+++yL +k++g+++e ++ev+++k+ePwdLp k +k++++ wyfF++r+ k+++ k +nr tk+g+Wk+t ++k Potri.002G154000.1 15 PVGFRFHPTHEELINHYLVPKTRGDNVEDLLLMAEVNLCKHEPWDLPdKsIMKSDDQAWYFFCRRELKNSNRKCSNRRTKAGFWKSTCQEK 105 89************************999888**************96447778999********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++++k +++++g++ktLvf+++ pk+++t W+++ey Potri.002G154000.1 106 PIKTKhTKKVIGIRKTLVFHEKAGPKAKRTGWIIDEYD 143 ***9967778***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-44 | 10 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.065 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-23 | 15 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MANPRSSVQL QLMNPVGFRF HPTHEELINH YLVPKTRGDN VEDLLLMAEV NLCKHEPWDL 60 PDKSIMKSDD QAWYFFCRRE LKNSNRKCSN RRTKAGFWKS TCQEKPIKTK HTKKVIGIRK 120 TLVFHEKAGP KAKRTGWIID EYDNITDSSL SKEGQYVLCR LKKKPDEKTK KGEQNHHMTA 180 VSDSDAEPSQ SMASNSESQN GSAMTVNSAF DASEIGYHVA TYNFETPNSN ELMNNSDPQV 240 SELNHYMASD SRNQNSNKVK SNSAYAVSGS LHSMSSNSKT LYWNQPTVGY CEGGKSHYKA 300 FDPETQISNN MIMPINEKSL MAYEKWLMAP DLKNQESPSQ PEGECGPSVV IPSLFINQST 360 NDSEPRSQMA SEFINRNADK EIDISDFDER SSLTETPPDF LNQNPCKKTD MSTLEEGYSS 420 NSTTSISDNN LADVALPEVI RKKLEKLEKF LEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-29 | 11 | 164 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-29 | 11 | 164 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-29 | 11 | 164 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-29 | 11 | 164 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-29 | 11 | 164 | 14 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-29 | 11 | 164 | 14 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G154000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182673 | 0.0 | AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301326.1 | 0.0 | NAC domain-containing protein 14 | ||||
TrEMBL | B9GPV3 | 0.0 | B9GPV3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s15530.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28215 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.2 | 5e-42 | NAC 014 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G154000.1 |
Entrez Gene | 7461744 |