PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.002G153500.1 | ||||||||
Common Name | POPTR_0002s15480g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25386.1 Da PI: 10.0758 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.5e-18 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d s +r r +lg+++++e Aa+a+++a+++l+g Potri.002G153500.1 28 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDSPEAAARAYDEAARALRG 77 589******.7*********43...36*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.4E-34 | 28 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-14 | 28 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.49E-17 | 28 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-27 | 28 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.271 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 29 | 40 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-19 | 29 | 85 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-6 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MAEPETLKNP TTATTNKAQA TKGPTARRFV GVRQRPSGRW VAEIKDSSQR VRLWLGTYDS 60 PEAAARAYDE AARALRGGNA RTNFASVNPS LNQSGSSPSN GGFNMPESDG RHSLSFSSLK 120 ARLSKNLQSI MARTTENKST KNRVSDHFTF ANIFHCRSYQ YQNPVDTKNI QKVVQPSIIV 180 PRVSGHEPSY SWETSSVSDC SNGWIGFRQH GLDSDGSDIG EVITVNADQM M |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.002G153500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC182673 | 0.0 | AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence. | |||
GenBank | AC183426 | 0.0 | AC183426.2 Populus trichocarpa clone Pop1-45L17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386587.2 | 1e-172 | ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A2K2BJ74 | 1e-172 | A0A2K2BJ74_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0014s07280.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-19 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.002G153500.1 |
Entrez Gene | 18096346 |