PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G152200.1
Common NamePOPTR_0002s15360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 349aa    MW: 37346.7 Da    PI: 10.0167
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G152200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.31.9e-3680195389
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec.e 74 
                          k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt                  +++s+s   +
  Potri.002G152200.1  80 LKRPSTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGYKSDGETIRWLLEHAEPAIIAATGTgtvpaiamsvngtlkipiTTNSSSGLgQ 170
                         6899***********************************************************4444444444444444332222212221 PP

                 TCP  75 aesssssasnsssg..................k 89 
                         +++ +        +                  +
  Potri.002G152200.1 171 PNATK--------NrkrpanseyvdvndtvsvS 195
                         11111........12222222344444444431 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3084175IPR005333Transcription factor, TCP
PROSITE profilePS5136926.97885139IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MASMQKQELG EDEDMRTVDL RINSRELSNI RARPTNRKDC NDMSVALKEE PSTEERSPTP  60
PLGVMPLAAV SVPLTTVTPL KRPSTKDRHT KVEGRGRRIR MPAACAARIF QLTRELGYKS  120
DGETIRWLLE HAEPAIIAAT GTGTVPAIAM SVNGTLKIPI TTNSSSGLGQ PNATKNRKRP  180
ANSEYVDVND TVSVSASLAP VTTQQPQSQP QLPPQPQQTV AAVPQGLVPM WAIPSNAVVP  240
GAFFMVPSIA GPSNQPQIFT FPAAATPLIN ISARPISSFV SSMQSNMAVA VPVSGSMTAK  300
GISMMAPSSS SACTVSTTST TTNRTPQMLR DFSLEIYDKQ ELQFMSRS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G152200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450071.10.0transcription factor TCP9
SwissprotO646471e-102TCP9_ARATH; Transcription factor TCP9
TrEMBLB9GPT70.0B9GPT7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-96TCP family protein