PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G143800.1
Common NamePOPTR_0002s14460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 333aa    MW: 37584.9 Da    PI: 7.1553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G143800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033426123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C ksFs+   L  H+r+H
  Potri.002G143800.1  4 HKCKLCFKSFSNGRALGGHMRSH 26
                        79********************9 PP
2zf-C2H214.40.00011197219123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k+F++   L  H  +H
  Potri.002G143800.1 197 YKCETCNKVFKSYQALGGHRASH 219
                         9************9999998887 PP
3zf-C2H212.80.00035251273123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C ++Fs+   L  H r+H
  Potri.002G143800.1 251 HECPYCFRVFSSGQALGGHKRSH 273
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-5330No hitNo description
SMARTSM003550.038426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
PfamPF139122.5E-6427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.87E-8197219No hitNo description
SMARTSM003550.01197219IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-11197221IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492197224IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SuperFamilySSF576675.87E-8246273No hitNo description
PfamPF139123.0E-11250274IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286251273IPR007087Zinc finger, C2H2
SMARTSM003550.17251273IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEKHKCKLCF KSFSNGRALG GHMRSHMLNL PIPPKLEDQF PDIEVNPEFS FAAVDAGSVV  60
LQDRESETES SKNPTRRRSK RTKSLLEHHH QYHQQRPRQE QENNIIIKKL EFKKMGTIKA  120
AAESSWGHEP EPVSSISGTT TEEDVAFCLV MLSRDKWKRK EQENQEEEQE LEEELAEAET  180
DDSDEFKSCK TKTRGKYKCE TCNKVFKSYQ ALGGHRASHK KLKVYTPSNE PKLERTENAG  240
ASTSLPEKKT HECPYCFRVF SSGQALGGHK RSHLIGVAAS SSTPARSSTR IGDNNWGFID  300
LNLPAPVDDD DISQVDQLSA VSDAEFVNYV RR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G143800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450701.10.0zinc finger protein ZAT9
TrEMBLA0A3N7EQJ90.0A0A3N7EQJ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-67C2H2-like zinc finger protein