PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G142400.1
Common NamePOPTR_0002s14330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 399aa    MW: 43784.6 Da    PI: 8.3569
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G142400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.7e-40167242176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +CqvegC++ l +ak yhrrhkvCe+hska++v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk 
  Potri.002G142400.1 167 RCQVEGCHVALVNAKGYHRRHKVCEMHSKAAKVIVLGLEQRFCQQCSRFHVVSEFDDAKRSCRRRLAGHNERRRKG 242
                         6*************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33161229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.949165242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-38166247IPR004333Transcription factor, SBP-box
PfamPF031104.1E-31168241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MENGGNKGQE NDHANLAWDI WELNTSRFDL VDSNNTTAAA GITTNTTTAS VVENGSSTHP  60
EANSAHGFLF PNRNSWLYHH NNSNSYQQLS LYAGDGSILH PDPHLMCLKL GKRHYFEDST  120
SNNNINPISD RHVVGGFSVG KRGKPYYTVS GGANDEPSSS SSVNVPRCQV EGCHVALVNA  180
KGYHRRHKVC EMHSKAAKVI VLGLEQRFCQ QCSRFHVVSE FDDAKRSCRR RLAGHNERRR  240
KGSLDSVSRN ASHDKLIAGR FPYIASPTGC ALSLLSSKAD SWVSPSDLSS RSSAALRELI  300
AEHRAAIPAR QLILEKHSHN HAMGESQPSS NFFITHQQQM LSEPHNWGRF NGTTMHVTLD  360
LMQAPSSAFG FLSARGKNKE EGGECSQLWS TLEGAHAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31159241284squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G142400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302512.10.0squamosa promoter-binding-like protein 7
TrEMBLB9GPA80.0B9GPA8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.43e-39squamosa promoter-like 11