PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G141200.1
Common NamePOPTR_0002s14210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 269aa    MW: 29284.5 Da    PI: 6.1714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G141200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1894143255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Potri.002G141200.1  94 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 143
                         69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-2194151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-3194152IPR001471AP2/ERF domain
PROSITE profilePS5103223.23594151IPR001471AP2/ERF domain
PfamPF008479.7E-1394143IPR001471AP2/ERF domain
SMARTSM003805.1E-3694157IPR001471AP2/ERF domain
CDDcd000181.73E-3295152No hitNo description
PRINTSPR003672.2E-1095106IPR001471AP2/ERF domain
PRINTSPR003672.2E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MPLALARDLP IMEKHINLEI DAQDNPLASS STTKGNISSS STPISCIKHQ GSKKEENSIA  60
PRVSRKAQEL QSSGNEGGKR RKTAENEKNG KHPTYRGVRM RSWGKWVSEI REPRKKSRIW  120
LGTYPTAEMA ARAHDVAALA IKGGSAYLNF PEFAHELPPP LSKSPKDIQA AAAKAAAASF  180
TETRYCEGEG GGEAELNVSN LSDSLAMDNT QESSSSPSTD SDDTLFDLPD LFIDGVHHSD  240
GFCYYSSSWQ LCAADTGFRL GEPFLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16911511172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G141200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559300.0EF155930.1 Populus trichocarpa TINY-like protein (TINYL11) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301249.30.0ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ73e-68ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2K2BIP10.0A0A2K2BIP1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14210.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]