PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G139500.1
Common NamePOPTR_0002s14030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 366aa    MW: 40637.9 Da    PI: 9.9617
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G139500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.47e-2245136187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                         +Wt +e+ aLi+a+r+++ +lrrg+lk+++W+ev++++     +    ++++qC++k+e+l+kry+ + +++++   s+ +s++++f++++
  Potri.002G139500.1  45 CWTPDETVALIDAYRDKWYTLRRGNLKANHWQEVADAVarrcPDASPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFTSSWVHFKRMD 135
                         8**********************************999655556667899************************97799***********8 PP

            trihelix  87 a 87 
                         a
  Potri.002G139500.1 136 A 136
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2344137No hitNo description
PROSITE profilePS500906.22646106IPR017877Myb-like domain
SMARTSM005956.5E-1553142IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSAPIKTGSP SSPQDLTPLQ TTAQQTLPAP PTHPSTNPRR LPPPCWTPDE TVALIDAYRD  60
KWYTLRRGNL KANHWQEVAD AVARRCPDAS PPKTAVQCRH KMEKLRKRYR TEIQRARSMP  120
VSRFTSSWVH FKRMDAMEKG PQAKADYNSE SEGDDNDDDN EDDGDIRGSY LENCRNAKNF  180
MNTRSIQKLY GNGIGNPGNG GDNNGLSGGN SSLGSGNAGG FRIRIPTGVS VAQPGPKFYA  240
KTEQKHGGSP NMGVNASPDP YPKPKYGGGV GTSSRVMRGS EEMGRKRERE PMEELVAAVK  300
VLGDGFVRME QMKMEMAREM ETMRMEMEMK RTEMILDSQQ RIVEAFAKAL SEKKKRPKRM  360
PSPES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G139500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2772200.0GU277220.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
GenBankGU2772220.0GU277222.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301240.10.0trihelix transcription factor ASIL2
TrEMBLB9GP790.0B9GP79_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.17e-83Trihelix family protein