PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G123300.1
Common NamePOPTR_0002s12480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 359aa    MW: 39612.7 Da    PI: 9.9548
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G123300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31286343359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYegeHnh+
  Potri.002G123300.1 286 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDSMMLIVTYEGEHNHS 343
                         99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-16236282IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.1E-33272345IPR003657WRKY domain
PROSITE profilePS5081131.582279345IPR003657WRKY domain
SuperFamilySSF1182908.63E-27282345IPR003657WRKY domain
SMARTSM007743.8E-37284344IPR003657WRKY domain
PfamPF031061.5E-26286342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAVELMMGYS GDCFATKMQE NAVREAAASG IQSVEEVIKL LKQNQLEQQH YQELSAASSS  60
SNLGTDNIMT VTDMAVNNFK KVISLLGRTT RTGHARFRRA PDTPPTQQQI REEPESQQEK  120
RQVQEPGPSV RAINSQPTEQ ASAFRVYQPT PIHRLPPLPH NQQQKSPLLV TKKGLSDRNE  180
IPTTINFSNS PSISSATSFM SSLTGETDGF QRSMPSRFHF TQPSAGKPPL SSSSLKRKCN  240
SMDDAALKCG SSSGRCHCSK KSRKSRAKRV VRVPAISNKM ADIPPDDYSW RKYGQKPIKG  300
SPHPRGYYKC SSVRGCPARK HVERALDDSM MLIVTYEGEH NHSHPFDDAP AALVPESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22272345274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.9150.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G123300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774340.0GQ377434.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301166.20.0probable WRKY transcription factor 7 isoform X1
SwissprotQ9STX01e-112WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLB9GNT70.0B9GNT7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-91WRKY DNA-binding protein 7