PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G115100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 468aa    MW: 51409.2 Da    PI: 8.5634
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G115100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.61.3e-24217261145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Potri.002G115100.1 217 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 261
                         79****************************************985 PP
2QLQ57.93e-20148183237
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         +FT  Q+++L++Q+l+yKy+ an+P+P++Ll +i+k
  Potri.002G115100.1 148 PFTQLQWMELEHQALIYKYMTANVPIPSNLLIPIRK 183
                         8*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.3E-11147183IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.511148183IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-15148182IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663217261IPR014977WRC domain
PfamPF088795.2E-21218260IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDFGVQVGLD GLVGSDTSNS GFASLASSDP DEKQKYGSGF LKQERSAAAD DDWRNSKLAK  60
TESMLLDQRN TFLLKSSNNS LFTDGQQQQQ MLSFSCPKSA SSGERSSPNA MLPYFHLTSS  120
ACNRNTGYNS GIFNAASMHG VLTETRWPFT QLQWMELEHQ ALIYKYMTAN VPIPSNLLIP  180
IRKALDSAGF SSFSGGLFKP SALQWGTFHM GFSSNTDPEP GRCRRTDGKK WRCSRDAVAD  240
QKYCERHMNR GRHRSRKPVE GQSGHSAAAT TTLKPMANGT SSFASASVVG LRSAVSDSHT  300
IVHNQQQPAS SSNLSATNTL SRVFLATENV GERMQDASGL SMLPSSIDLK SKETPFFISK  360
QQNSYGESLQ NEFALVTSDS LLNHSQKSSS LMSCRNFGSS QDLTDQESVS QHSLRQFMDD  420
CPKSHSDRSA VAWPGLDPSY QFQSPWLLQT LCHPLHLQTM KRSLSPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G115100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733681e-61AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301140.30.0LOW QUALITY PROTEIN: growth-regulating factor 1
TrEMBLA0A2K2BHE60.0A0A2K2BHE6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Representative plantOGRP33571226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.13e-69growth-regulating factor 1