PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G114800.1
Common NamePOPTR_0002s11550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 664aa    MW: 73048.9 Da    PI: 6.9591
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G114800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.7e-16324383155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Potri.002G114800.1 324 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 383
                         78*******************988886678446*************************98 PP
2AP246.49.6e-15426477155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.002G114800.1 426 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 477
                         57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-13324383IPR001471AP2/ERF domain
CDDcd000186.90E-22324391No hitNo description
SuperFamilySSF541711.11E-16324393IPR016177DNA-binding domain
SMARTSM003802.7E-29325397IPR001471AP2/ERF domain
PROSITE profilePS5103219.203325391IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-16325392IPR001471AP2/ERF domain
PRINTSPR003678.7E-6326337IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-17426486IPR016177DNA-binding domain
PfamPF008471.4E-9426477IPR001471AP2/ERF domain
CDDcd000184.55E-25426487No hitNo description
SMARTSM003801.1E-33427491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-18427485IPR001471AP2/ERF domain
PROSITE profilePS5103218.913427485IPR001471AP2/ERF domain
PRINTSPR003678.7E-6467487IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MKSTGDNNNG SNNNWLGFSL SPHMKMEVAS DPQHHHQYHH QNHAPTAVSV SAAVPTSFYL  60
STTHYNSPGI SYGVGENDGF HSPLSVMPLK SDGSLCIMEA LTRSQPEGMV SSPSPKLEDF  120
LGGATIESHQ YSSHEREAMA LSLDSLYYHQ NSEPSTNRQH SLDLHEPFRQ QDQQFSVQPH  180
PYYSGIAFQG LYQAPLEGET KGTQLADCNS HIPQMGDDEL PCLKNWVARH YSSQSALEQQ  240
INSSMVNDGG SSCSVSAMGC GDLQSLSLSM SPGSQSSCIT APRQISPTGA ECAAIETKKR  300
GPAKVGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQVY  360
LGGYDMEEKA ARAYDLAALK YWGPSTHINF PLENYQEELE EMKNMSRQEY VAHLRRKSSG  420
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGVNA  480
VTNFNITRYD VDRIMASNTL LAGELARRNR DTESSIEAID YNSSTHDNGV LYQSSQEPPN  540
ACGESLDQKS MSSGNYRSSS FSVALQDLIG IDHSVNSSQL VVDESAKLGT LLSNPSSLVT  600
SLSSSREPSP DKTATTMLFA KPPLASKFVS PTTSVTPWFQ AAQLRPAAIP MSHLPVFAAW  660
NDT*
Function -- GeneRIF ? help Back to Top
  1. These results demonstrate that PtAIL1 is a positive regulator of poplar rooting that acts early in the development of adventitious roots.[PtAIL1]
    [PMID: 23077242]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G114800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM8536700.0HM853670.1 Populus tremula x Populus alba aintegumenta (ANT) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451945.10.0AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2K2BHD30.0A0A2K2BHD3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-156AP2 family protein
Publications ? help Back to Top
  1. Rigal A, et al.
    The AINTEGUMENTA LIKE1 homeotic transcription factor PtAIL1 controls the formation of adventitious root primordia in poplar.
    Plant Physiol., 2012. 160(4): p. 1996-2006
    [PMID:23077242]