PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G113700.1 | ||||||||
Common Name | POPTR_0002s11440g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 354aa MW: 39444.3 Da PI: 5.7102 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1.1e-14 | 14 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg........kgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W + ++++ ++R++k+c++rw++yl Potri.002G113700.1 14 KGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIDigvvsesgLKRCGKSCRLRWLNYL 70 79*****************************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.5 | 5.5e-12 | 77 | 119 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Potri.002G113700.1 77 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 119 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.172 | 9 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-25 | 11 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-11 | 13 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 14 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 15 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.31E-8 | 16 | 70 | No hit | No description |
PROSITE profile | PS51294 | 21.666 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-11 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 77 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 78 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.81E-8 | 79 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIDIGVV SESGLKRCGK 60 SCRLRWLNYL RPNIKHGGFS EEEDNIICSL YISIGSRWSI IAAQLPGRTD NDIKNYWNTR 120 LKKKLLGKQR KEQQARRSSG LKQEMKRGNG NPVVPADNNN QNPYWPELPI LAPIPYSNHE 180 PHFNDHASIR KLLIKLGGKF SDDDQVNHNA MNPQFPADVS YTQQLYDDQS INVSSSAPME 240 ETLDDTDTQF AQTQYDIDGA AGLQMLQGQS SFPAGLEQMV SSNPPRLDGL EFLLGDDMVN 300 NRIRTAYGTE SMIDCGEMTS LIFPPGASNC EGIIQQRLLQ ECAFDEPRYP GPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-24 | 14 | 125 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G113700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034713 | 4e-52 | KM034713.1 Jatropha curcas clone JcMYB093 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450763.1 | 0.0 | transcription factor RAX3 isoform X1 | ||||
TrEMBL | B9GNK5 | 0.0 | B9GNK5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s11440.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 3e-75 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G113700.1 |
Entrez Gene | 7467242 |