PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G110900.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 255aa    MW: 27768.8 Da    PI: 7.1768
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G110900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-16201234132
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                         C++Cgt +  Tp++Rrgp+g+++LCnaCGl+++ 
  Potri.002G110900.2 201 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWAN 234
                         *******99***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.37369104IPR010399Tify domain
SMARTSM009792.9E-1269104IPR010399Tify domain
PfamPF062001.1E-1272103IPR010399Tify domain
PROSITE profilePS5101712.451133175IPR010402CCT domain
PfamPF062039.1E-16133175IPR010402CCT domain
SuperFamilySSF577164.75E-11194244No hitNo description
SMARTSM004017.4E-12195248IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.853195231IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-14199236IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.21E-12200243No hitNo description
PROSITE patternPS003440201228IPR000679Zinc finger, GATA-type
PfamPF003204.5E-14201234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MYTPSQPMNV HNQIVSPGVD DDGAPADPID HHHHIHYEDG TPAVVVEDVS PDSVYVTAGV  60
AASELGIQPS DGSSQLTLTF RGQVYVFDSV TPDKVQAVLL LLGGCELTPG LELTPQNQRG  120
VGEYPPRCTQ PQRAASLSRF RQKRKERCFD KKVRYGVRQE VALRMQRNKG QFTSAKKSEG  180
GYGWDGGQDS AQDDSQHETS CTHCGTNSKS TPMMRRGPSG PRSLCNACGL FWANRVRNFE  240
RSLQESPGAF CGSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.10910.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G110900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2771451e-157GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302364.11e-177GATA transcription factor 25 isoform X1
SwissprotQ9LRH68e-79GAT25_ARATH; GATA transcription factor 25
TrEMBLB9GN861e-176B9GN86_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11150.11e-177(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-74GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]