PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G110900.1 | ||||||||
Common Name | POPTR_0002s11150g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 291aa MW: 31465.8 Da PI: 6.3671 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.1 | 4.3e-17 | 201 | 237 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt + Tp++Rrgp+g+++LCnaCGl+++ +g+ Potri.002G110900.1 201 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 237 *******99************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 15.373 | 69 | 104 | IPR010399 | Tify domain |
SMART | SM00979 | 2.9E-12 | 69 | 104 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.3E-12 | 72 | 103 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.1E-15 | 133 | 175 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.451 | 133 | 175 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.684 | 195 | 244 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.6E-14 | 195 | 248 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-12 | 197 | 245 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.1E-15 | 199 | 241 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.04E-15 | 200 | 244 | No hit | No description |
Pfam | PF00320 | 9.6E-15 | 201 | 237 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 201 | 228 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MYTPSQPMNV HNQIVSPGVD DDGAPADPID HHHHIHYEDG TPAVVVEDVS PDSVYVTAGV 60 AASELGIQPS DGSSQLTLTF RGQVYVFDSV TPDKVQAVLL LLGGCELTPG LELTPQNQRG 120 VGEYPPRCTQ PQRAASLSRF RQKRKERCFD KKVRYGVRQE VALRMQRNKG QFTSAKKSEG 180 GYGWDGGQDS AQDDSQHETS CTHCGTNSKS TPMMRRGPSG PRSLCNACGL FWANRGTLRD 240 HSKKALEHSV APIDLGETEA NESDSVPAIN THNNPVTYAN GGDTALITDH * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1091 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00451 | DAP | Transfer from AT4G24470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G110900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU277145 | 1e-157 | GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302364.1 | 0.0 | GATA transcription factor 25 isoform X1 | ||||
Swissprot | Q9LRH6 | 4e-89 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | B9GN86 | 0.0 | B9GN86_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s11150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 5e-85 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G110900.1 |
Entrez Gene | 7461845 |
Publications ? help Back to Top | |||
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