PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G097700.3

Common Name

POPTR_0002s09790g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 1277aa MW: 139605 Da PI: 4.7131

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G097700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.8e-05	426	448	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+ F +++L +H+ +H Potri.002G097700.3 426 YKCHKCTVAFDKQDDLLQHLLSH 448 9*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.073	300	373	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	2.55E-8	306	366	IPR016177	DNA-binding domain
Pfam	PF01429	4.5E-6	309	354	IPR001739	Methyl-CpG DNA binding
Gene3D	G3DSA:3.30.890.10	6.5E-5	310	394	IPR001739	Methyl-CpG DNA binding
SMART	SM00355	0.037	426	448	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.723	426	453	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	428	448	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.4	472	494	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.286	472	499	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	474	494	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1277 aa Download sequence Send to blast
MATATVDSSI CDLQNHLHIE SLPLIDLRHL SQSELLSLSF CSSSPHRLRT DTADVSTPKI 60 DRSVFNESAG SRKQTFSRLR LAPRNNNASP SSNSTPVVPF QNTERQPLDE ENSQIISLLK 120 SLFGSDSNSI ENKNEHYHKL VSIPVIYNDY MRLPSTNNAE SQNVSIDIWD SSQGGLKRLE 180 VNHSISIRTA ESSSKKRKRG RPRKNENVNF DNNDNSELVE NKTIAVVCDN VEVESKKKEE 240 MVMVNKNGVV VDFGALGNME DPYGEELRRR TEGMQLKAEF LGFLEGFEGE WGSMRKKRRI 300 VDASLFGDVL PIGWKLSICI KKQAGRVWLA CTRYISPNGQ QFVSCKEVSS YLLSFSGLHD 360 VSRLNFGHMD GRIKLTDKIS PSIPADHTRK DGKNENDFIS YMALPVTCRS IEMGGCPVEV 420 QMGNKYKCHK CTVAFDKQDD LLQHLLSHQR APKQLRFGTS TNEEVIIKNG KYECQFCHKL 480 FEERHRFNGH LGNHIKEYLK RLDASNGKTT GESDEPALVK IPPGAGKIQT LIEFDRDSDA 540 ITVNTKISDE INSTIPYCEL KAITSVETHC GEQDRVFISS NDGAGKMNED TDAVAAENRV 600 SSEPALLNND IHRSSDETDV PKCPTNGTSD LGRKDKSFKN CSVAGGARDV TCIGHNNSNH 660 VSPCLIEELN QERDSNCGLL ASNAKVNTSN DDIIEDRHCS SPIDNMVIDG WGIDGKGEPI 720 TGCCNSYAAM GGNAAVNLRE QTISEGCYVA DSETGLFTFN AVETMLEKGS KGGLTGIENN 780 MNSVCTGMSN ESRFDDVVKS GTNEITIVCC GDNTVLAGDN VTSNEQGGNH GAGSVIPFLL 840 NQHTHLVENT ITGAPKCILR EPCQGKESED CPITTSGNEQ LFDFESNVIK VSNGTIDVAN 900 HDQVGSEIDL VPQTLTSIKQ EEISKTLTFA PFTNGFASKD YGISNSVLEK LEQGRNSGRG 960 SSDNEQSHDV KDIVNGLSFT TVEEDNQQEV KISCNGELHI ASDDNCTEQD ADVGTGTVQK 1020 CSLFAGSQLA FTAKDNPTGP YSGAVDELKQ KMDSVESAVC PSGSEPVWSV EKNLQTAFTG 1080 SVQEEPRVEN SENPRKDDSG IGFSSHPGPD ESDVISEFMW RNDEESNLLS DFADTSCQPV 1140 QTSSFFPPYD AVSDKGESEL FAEKFGATSG FEGLKLGGMD NMECNLPTSQ VSSHSDESKV 1200 GTYDAVMPKG ITSSIWLAKE DLPFVPKDSS RHHVPAVCVW CGREICQEAL ESEGQTSTMG 1260 FMCAECTAKL SGQFNG*

Sequence ? help Back to Top

Protein Sequence Length: 1277 aa Download sequence Send to blast

MATATVDSSI CDLQNHLHIE SLPLIDLRHL SQSELLSLSF CSSSPHRLRT DTADVSTPKI  60
DRSVFNESAG SRKQTFSRLR LAPRNNNASP SSNSTPVVPF QNTERQPLDE ENSQIISLLK  120
SLFGSDSNSI ENKNEHYHKL VSIPVIYNDY MRLPSTNNAE SQNVSIDIWD SSQGGLKRLE  180
VNHSISIRTA ESSSKKRKRG RPRKNENVNF DNNDNSELVE NKTIAVVCDN VEVESKKKEE  240
MVMVNKNGVV VDFGALGNME DPYGEELRRR TEGMQLKAEF LGFLEGFEGE WGSMRKKRRI  300
VDASLFGDVL PIGWKLSICI KKQAGRVWLA CTRYISPNGQ QFVSCKEVSS YLLSFSGLHD  360
VSRLNFGHMD GRIKLTDKIS PSIPADHTRK DGKNENDFIS YMALPVTCRS IEMGGCPVEV  420
QMGNKYKCHK CTVAFDKQDD LLQHLLSHQR APKQLRFGTS TNEEVIIKNG KYECQFCHKL  480
FEERHRFNGH LGNHIKEYLK RLDASNGKTT GESDEPALVK IPPGAGKIQT LIEFDRDSDA  540
ITVNTKISDE INSTIPYCEL KAITSVETHC GEQDRVFISS NDGAGKMNED TDAVAAENRV  600
SSEPALLNND IHRSSDETDV PKCPTNGTSD LGRKDKSFKN CSVAGGARDV TCIGHNNSNH  660
VSPCLIEELN QERDSNCGLL ASNAKVNTSN DDIIEDRHCS SPIDNMVIDG WGIDGKGEPI  720
TGCCNSYAAM GGNAAVNLRE QTISEGCYVA DSETGLFTFN AVETMLEKGS KGGLTGIENN  780
MNSVCTGMSN ESRFDDVVKS GTNEITIVCC GDNTVLAGDN VTSNEQGGNH GAGSVIPFLL  840
NQHTHLVENT ITGAPKCILR EPCQGKESED CPITTSGNEQ LFDFESNVIK VSNGTIDVAN  900
HDQVGSEIDL VPQTLTSIKQ EEISKTLTFA PFTNGFASKD YGISNSVLEK LEQGRNSGRG  960
SSDNEQSHDV KDIVNGLSFT TVEEDNQQEV KISCNGELHI ASDDNCTEQD ADVGTGTVQK  1020
CSLFAGSQLA FTAKDNPTGP YSGAVDELKQ KMDSVESAVC PSGSEPVWSV EKNLQTAFTG  1080
SVQEEPRVEN SENPRKDDSG IGFSSHPGPD ESDVISEFMW RNDEESNLLS DFADTSCQPV  1140
QTSSFFPPYD AVSDKGESEL FAEKFGATSG FEGLKLGGMD NMECNLPTSQ VSSHSDESKV  1200
GTYDAVMPKG ITSSIWLAKE DLPFVPKDSS RHHVPAVCVW CGREICQEAL ESEGQTSTMG  1260
FMCAECTAKL SGQFNG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G097700.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302301.1	0.0	uncharacterized protein LOC7461780 isoform X1
Refseq	XP_024451191.1	0.0	uncharacterized protein LOC7461780 isoform X1
Refseq	XP_024451192.1	0.0	uncharacterized protein LOC7461780 isoform X1
TrEMBL	B9GUW9	0.0	B9GUW9_POPTR; Uncharacterized protein
STRING	POPTR_0002s09790.1	0.0	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.002G097700.3
Entrez Gene	7461780