PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G096800.1
Common NamePOPTR_0002s09720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 337aa    MW: 37290.2 Da    PI: 6.5614
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G096800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+lvd +k++G g+W++ ++  g++R++k+c++rw +yl
  Potri.002G096800.1 14 KGPWTPEEDEKLVDHIKKHGQGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding551.8e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++++E++ +++++  +G++ W++Ia +++ gRt++++k++w+++l
  Potri.002G096800.1  67 RGKFSQDEEQTILHLHSIHGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.767961IPR017930Myb domain
SuperFamilySSF466891.13E-3111108IPR009057Homeodomain-like
SMARTSM007173.1E-161363IPR001005SANT/Myb domain
PfamPF002491.4E-171461IPR001005SANT/Myb domain
CDDcd001673.55E-131661No hitNo description
PROSITE profilePS5129427.21862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2765117IPR009057Homeodomain-like
SMARTSM007176.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1667112IPR001005SANT/Myb domain
CDDcd001676.70E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRSPCCDEI GLKKGPWTPE EDEKLVDHIK KHGQGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQDEEQTILH LHSIHGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPLT DFFASLPQLM ALANLREPME HHPLDEHAMG LQAEALQLAK LQYLQCLLQS  180
AASLIPSANS YDQNGITDLE VLNLLNSIPP IKENPVLNSS ELENQGSYHF GNATSQLLHH  240
PSLLSQLSAP QVPFSYQPSL NTEMGQAPFL TTILSQGDRN PSDSSWVLPS PTLAPQAATE  300
TSRSNPGDAS SITSSYGGVT SWPELLFEGP IMHDIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G096800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347262e-35KM034726.1 Jatropha curcas clone JcMYB106 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301053.10.0transcription factor MYB93
SwissprotQ9S9Z21e-114MYB93_ARATH; Transcription factor MYB93
TrEMBLB9GUW10.0B9GUW1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s09720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-103myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]