PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.002G094200.1 | ||||||||
Common Name | POPTR_0002s09480g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 345aa MW: 38061.5 Da PI: 8.0929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 162 | 211 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Potri.002G094200.1 162 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 211 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.91E-34 | 161 | 221 | No hit | No description |
PROSITE profile | PS51032 | 23.117 | 162 | 219 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-23 | 162 | 220 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-38 | 162 | 225 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 162 | 220 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 163 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-14 | 163 | 211 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 185 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MDFHSSSPLQ SDLLGGGELM EALEPFMRSA SPSTTPSPSQ TSNYPSSPSP PSTSSNRFSF 60 SPQPPQQHQQ SLFNPDGCCS TSTTYPFSTG LSFNDPMGLQ QPSSSIGLNH LTPTQVHQIQ 120 TQMHHNNLSY LQAYQQPQTL KFLSPKPIPM KQIGTPPKAT KLYRGVRQRH WGKWVAEIRL 180 PKNRTRLWLG TFDTAEEAAL AYDRAAYKLR GDFARLNFPN LLHQGSYIGE YKPLHSSVDA 240 KLQAICKSLE NSSQQKQGGK AKRQSNSTKK KANLAVVTQE EEQVVVKAET ESPALTESTA 300 SGGSSPLSDL TFPDFEEAPL DFESGNFMLQ KYPSYEIDWA SILS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 161 | 219 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.11677 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.002G094200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF148110 | 0.0 | EF148110.1 Populus trichocarpa clone WS0127_K12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301042.2 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 8e-91 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A9PI91 | 0.0 | A9PI91_POPTR; ERF family protein | ||||
STRING | POPTR_0002s09480.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78080.1 | 6e-74 | related to AP2 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.002G094200.1 |
Entrez Gene | 7495144 |
Publications ? help Back to Top | |||
---|---|---|---|
|