PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G092300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 357aa    MW: 40884 Da    PI: 6.0794
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G092300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.9e-28958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l  +s
  Potri.002G092300.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58
                        79********************************************9997 PP
2K-box211.4e-08120190979
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                          ++ ++e+lq+e+a+L ++++  ++++R +  + ++  s+ eL++  ++L + l+++ ++K+ ll ++++ 
  Potri.002G092300.1 120 PTAINSEELQHEIARLLQRLQLAEEQIRIYEPDPIKFTSMGELESCDKRLVDTLSRVMQRKEYLLSNHLSS 190
                         5667899**********************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.179161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.52E-35269No hitNo description
SuperFamilySSF554552.22E-29282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-26323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGK  60
KRIEDVLARL VNLPDQERQL AIVFPEQGQH QRDIQNKEYL FRTLQQLRNE SDIALQLSNP  120
TAINSEELQH EIARLLQRLQ LAEEQIRIYE PDPIKFTSMG ELESCDKRLV DTLSRVMQRK  180
EYLLSNHLSS FNPSRLEHGL PTSSFNNDMV NWLPDAGSDH AEILHHGAHN HAQIFNACTP  240
LNALRNLSST MYDSLLQGSH SNAEAHNFRE WPGDGNFPQW PPYNSTVLHS NPMSPSLYSQ  300
IQHEMVGPNI PDMMPREQVE IPISSPHLQV ENDGASYEDN KVPRLDDQEH QTIFEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-16158158Myocyte-specific enhancer factor 2B
1tqe_Q6e-16158158Myocyte-specific enhancer factor 2B
1tqe_R6e-16158158Myocyte-specific enhancer factor 2B
1tqe_S6e-16158158Myocyte-specific enhancer factor 2B
3mu6_A3e-16258157Myocyte-specific enhancer factor 2A
3mu6_B3e-16258157Myocyte-specific enhancer factor 2A
3mu6_C3e-16258157Myocyte-specific enhancer factor 2A
3mu6_D3e-16258157Myocyte-specific enhancer factor 2A
6c9l_A6e-16158158Myocyte-specific enhancer factor 2B
6c9l_B6e-16158158Myocyte-specific enhancer factor 2B
6c9l_C6e-16158158Myocyte-specific enhancer factor 2B
6c9l_D6e-16158158Myocyte-specific enhancer factor 2B
6c9l_E6e-16158158Myocyte-specific enhancer factor 2B
6c9l_F6e-16158158Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G092300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451014.10.0agamous-like MADS-box protein AGL104 isoform X6
SwissprotQ9LM461e-115AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A2K2BG100.0A0A2K2BG10_POPTR; Uncharacterized protein
STRINGPOPTR_0002s09290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-107AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]