PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G087500.1
Common NamePOPTR_0002s08810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 426aa    MW: 47302.9 Da    PI: 9.3486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G087500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-05192214223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp Cg+ F+  ++L+ H+ + H
  Potri.002G087500.1 192 SCPECGEIFTKAESLELHQAVrH 214
                         8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.432191219IPR007087Zinc finger, C2H2
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
SuperFamilySSF563992.01E-21216424No hitNo description
Gene3DG3DSA:3.90.228.105.8E-16217423IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAKPKNSRTT KEVQQNQNYH PLKTEKPPSW LVVRGLFSCK HLQAQQQQPE QKQPQQQKQD  60
QLQQPKKERK HNQRQDRSAE ETSKKCKKMR CSGSICSNTK VMHRPETTSP EVQRKGASMG  120
SAGKNDTSSR SMKAPLHELN GVVSSTNSSL SASSNFRGMP FSRFSGCYEC RMVVDPVLGI  180
SRDHSLWGSI CSCPECGEIF TKAESLELHQ AVRHAVSELS PEDTSKNIVE IIFQSSWLKK  240
QAPICKIDRI LKVHNTQRTI SKFEEYRDSI KAKAAKLPKK QPRCIADGNE LLRFHCTTFA  300
CSIGLNGSSN LCISVPNCKV CSIIKNGFKD PTGGDDNGHG ILTTATSGKA HDKATTLEDG  360
NGDSEKRAML VCRVIAGRVK KSMEGNIEDY DSVAAGMEVY SNLDELYVFN PRAILPCFVV  420
IYRGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G087500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2757461e-159GU275746.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence.
GenBankGU2757471e-159GU275747.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence.
GenBankGU2757481e-159GU275748.1 Populus balsamifera isolate LOV02 haplotype A unknown gene, partial sequence.
GenBankGU2757491e-159GU275749.1 Populus balsamifera isolate LOV02 haplotype B unknown gene, partial sequence.
GenBankGU2757501e-159GU275750.1 Populus balsamifera isolate STO11 haplotype A unknown gene, partial sequence.
GenBankGU2757511e-159GU275751.1 Populus balsamifera isolate STO11 haplotype B unknown gene, partial sequence.
GenBankGU2757521e-159GU275752.1 Populus balsamifera isolate WHR03 haplotype A unknown gene, partial sequence.
GenBankGU2757531e-159GU275753.1 Populus balsamifera isolate WHR03 haplotype B unknown gene, partial sequence.
GenBankGU2757541e-159GU275754.1 Populus balsamifera isolate MGR10 haplotype A unknown gene, partial sequence.
GenBankGU2757551e-159GU275755.1 Populus balsamifera isolate MGR10 haplotype B unknown gene, partial sequence.
GenBankGU2757561e-159GU275756.1 Populus balsamifera isolate GAL12 haplotype A unknown gene, partial sequence.
GenBankGU2757571e-159GU275757.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBankGU2757581e-159GU275758.1 Populus balsamifera isolate HAY07 haplotype A unknown gene, partial sequence.
GenBankGU2757591e-159GU275759.1 Populus balsamifera isolate HAY07 haplotype B unknown gene, partial sequence.
GenBankGU2757601e-159GU275760.1 Populus balsamifera isolate INU03 haplotype A unknown gene, partial sequence.
GenBankGU2757611e-159GU275761.1 Populus balsamifera isolate INU03 haplotype B unknown gene, partial sequence.
GenBankGU2757621e-159GU275762.1 Populus balsamifera isolate NWL07 haplotype A unknown gene, partial sequence.
GenBankGU2757631e-159GU275763.1 Populus balsamifera isolate NWL07 haplotype B unknown gene, partial sequence.
GenBankGU2757641e-159GU275764.1 Populus balsamifera isolate FBK13 haplotype A unknown gene, partial sequence.
GenBankGU2757651e-159GU275765.1 Populus balsamifera isolate FBK13 haplotype B unknown gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450997.10.0uncharacterized protein LOC7495111
TrEMBLA0A2K2BFP40.0A0A2K2BFP4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s08810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.19e-97C2H2-like zinc finger protein