PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G085600.1 | ||||||||
Common Name | POPTR_0002s08610g, RAP2L16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23576.3 Da PI: 4.8217 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 26 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g Potri.002G085600.1 26 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 76 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 23 | No hit | No description |
CDD | cd00018 | 6.67E-21 | 26 | 86 | No hit | No description |
SMART | SM00380 | 6.7E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.694 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 27 | 85 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-11 | 27 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-30 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVKNEHKIQS ETSTPMPTSS SACKKKKYKG VRMRSWGSWV SEIRAPNQKT RIWLGSYSTP 60 EAAARAYDAA LLCLKGSSAN LNFPITSSHY IPDAVMSPKS IQRVAAAAAN SSEDNPTTPQ 120 VSSLPLPSSS SSSSSILSSP SMVSSPSDQP DDYMSLMESF ETDNEPIPML DSWYNFDGLQ 180 SPKYIDQMFN GVSFNPPMID DFYEGDIRLW SFAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 24 | 85 | 2 | 64 | ATERF1 |
3gcc_A | 1e-14 | 24 | 85 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G085600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155957 | 0.0 | EF155957.1 Populus trichocarpa RAP2-like protein (RAP2L16) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386376.1 | 1e-156 | ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9SFE4 | 1e-44 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A9PLA6 | 1e-154 | A9PLA6_POPTR; RAP2-like protein | ||||
STRING | POPTR_0002s08610.1 | 1e-155 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77640.1 | 4e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G085600.1 |
Entrez Gene | 18096217 |
Publications ? help Back to Top | |||
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