PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G081000.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 24047.1 Da PI: 11.3163 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 5e-53 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv +yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfF++rd+ky++g+r+nra+ +gyWkatg dk+ Potri.002G081000.2 8 LPPGFRFHPTDEELVLHYLCRKCSSQPIAV-PIIAEIDLYKFDPWDLPGIALYGEKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKP 97 79**************************99.88***************65556899*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++vg+kk Lvfy g+apkgekt+W+mheyrl Potri.002G081000.2 98 IGQ--PKTVGIKKALVFYAGKAPKGEKTNWIMHEYRL 132 *98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-58 | 4 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.831 | 8 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-28 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTAATLELPP GFRFHPTDEE LVLHYLCRKC SSQPIAVPII AEIDLYKFDP WDLPGIALYG 60 EKEWYFFTPR DRKYPNGSRP NRAAGRGYWK ATGADKPIGQ PKTVGIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLADVDRSAR KKNSLRVRWM IGYSVAYTTR KVQLRSKNSI LASRKRIRRR 180 LRRMRRSRLF CCRHHKLRPR RQER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-72 | 4 | 132 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 182 | KRIRRRLRR |
2 | 175 | 181 | RIRRRLR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.5244 | 0.0 | stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G081000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU227979 | 0.0 | CU227979.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300972.1 | 1e-106 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-92 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B9GU14 | 1e-104 | B9GU14_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s08150.1 | 1e-105 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-94 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G081000.2 |