PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G079000.1
Common NamePOPTR_0002s07920g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24669.2 Da    PI: 7.733
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G079000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.2e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien+snrqvt+skRr gi+KKA+E+ vLCda+v+++if+s+g+++ey+s
  Potri.002G079000.1  9 KRIENSSNRQVTYSKRRSGIIKKAKEITVLCDAQVSLVIFASSGRMHEYCS 59
                        79***********************************************96 PP

2K-box70.55.3e-2471169199
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         y+k+sgk+l++ak+e+l++e++++kke+e++q e+Rhl+G+d++sL +keL+ +e++L+++l  +R+k++e+  +  ++ +   +e ++ +
  Potri.002G079000.1  71 YHKQSGKRLWDAKHENLSNEIDRIKKENESMQIELRHLKGQDISSLPHKELMAIEEALDTGLAAVRKKQMEFHSMLEQNEKILDEEFKHLQ 161
                         8999*******************************************************************99999999999999999999 PP

               K-box  92 kaLrkkle 99 
                           L+++ +
  Potri.002G079000.1 162 FVLQQQEM 169
                         99998865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.057161IPR002100Transcription factor, MADS-box
CDDcd002656.09E-40280No hitNo description
SuperFamilySSF554555.89E-35296IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.8E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1682162IPR002487Transcription factor, K-box
PROSITE profilePS5129713.19384170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRSGIIK KAKEITVLCD AQVSLVIFAS SGRMHEYCSP  60
STTVVDLLDK YHKQSGKRLW DAKHENLSNE IDRIKKENES MQIELRHLKG QDISSLPHKE  120
LMAIEEALDT GLAAVRKKQM EFHSMLEQNE KILDEEFKHL QFVLQQQEMA MEENAMEMEN  180
AYHQQRVRDY NSQVPLAFRV QPIQPNLQER M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-16191183MEF2 CHIMERA
6bz1_B1e-16191183MEF2 CHIMERA
6bz1_C1e-16191183MEF2 CHIMERA
6bz1_D1e-16191183MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.124320.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G079000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0291720.0EU029172.1 Populus deltoides MADS box transcription factor (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300964.11e-157floral homeotic protein PMADS 2
SwissprotQ0HA251e-123MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLB9GU031e-155B9GU03_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07920.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Representative plantOGRP53021222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]