PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G073500.1 | ||||||||
Common Name | POPTR_0002s07440g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 38052.1 Da PI: 9.8272 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 21 | 66 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l ++v+q+G +W+ Ia++++ gR++k+c++rw++ Potri.002G073500.1 21 RGHWRPAEDDKLRQLVEQYGAQNWNDIAEKLQ-GRSGKSCRLRWFNQ 66 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.4e-18 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Potri.002G073500.1 73 RRPFSEEEEERLLAAHQVHGNK-WALIARVFP-GRTDNAVKNHWHV 116 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.678 | 16 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-29 | 20 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-14 | 20 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-27 | 22 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-12 | 24 | 65 | No hit | No description |
Pfam | PF13921 | 2.4E-17 | 24 | 84 | No hit | No description |
PROSITE profile | PS51294 | 27.133 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.48E-7 | 84 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEEYSLAGNS SDDAKSTACP RGHWRPAEDD KLRQLVEQYG AQNWNDIAEK LQGRSGKSCR 60 LRWFNQLDPR INRRPFSEEE EERLLAAHQV HGNKWALIAR VFPGRTDNAV KNHWHVIMAR 120 KQREQSKLCG KRRYQDSLSD SNPPSSSSHA RKSRTQELFS SRIGFEDSRE CEFRNPSKDR 180 TFSISPSSSS PSWNSPPSTL AASNNCSLVD LSRRKGRDNY FNSSLLCTTE SSKVSDQSIY 240 RYHMNSSGRS SNWSSSKFGL PNYRRVVPSP LGYLKLGDDY GNHGMIKKEL YCHNSSTLKN 300 MRATSNHQEQ RDHESIRHKD VPFIDFLGVG ISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-30 | 21 | 121 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G073500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216455 | 0.0 | AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386329.2 | 0.0 | transcription factor MYB56 | ||||
TrEMBL | A0A2K2BEX4 | 0.0 | A0A2K2BEX4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s07440.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-65 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G073500.1 |
Entrez Gene | 18096185 |