PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G070700.2

Common Name

POPTR_0002s07150g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 294aa MW: 33322.9 Da PI: 4.3627

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G070700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.5	2e-35	31	86	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvP Ggg+rk +++ Potri.002G070700.2 31 PNCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPAGGGCRKYRRN 86 58**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	19	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-30	31	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.838	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MYSASDQMMF QCPPRPFPME RKWKSNIEVA PNCPRCASPN TKFCYYNNYS LSQPRYFCKG 60 CRRYWTKGGS LRNVPAGGGC RKYRRNERAA VSLDYSRANE TLACSSNKDS VAQQDGANGS 120 DIDLAAVFSK FLNQDLSYGP EFIGEELRDE GSELVNISNS STPISDSYQN DPMMESLKRS 180 DLTQESNLLE GRSQVLVGEK QQFEEDQRFQ ELIESQDMNA FGLQNLLIDE IVQDALWSDD 240 ATLPHVPNWQ PMVQLQDFDS FSVDDRLKIS ANFTSDDNWS SFDLSGFEVF PRP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	ESLKRS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12250	0.0	bud\| catkin

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G070700.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU222746	1e-137	CU222746.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024451995.1	0.0	dof zinc finger protein DOF1.2
TrEMBL	A0A2K2BES3	0.0	A0A2K2BES3_POPTR; Uncharacterized protein
STRING	POPTR_0002s07150.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-44	Dof family protein

Link Out ? help Back to Top
Phytozome	Potri.002G070700.2
Entrez Gene	7467828