PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G065600.1
Common NamePOPTR_0002s06620g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 458aa    MW: 49411 Da    PI: 6.5927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G065600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-20218267255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Potri.002G065600.1 218 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDDAALRFRG 267
                         7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-32218276IPR001471AP2/ERF domain
PfamPF008471.5E-13218267IPR001471AP2/ERF domain
PROSITE profilePS5103225.699218275IPR001471AP2/ERF domain
SMARTSM003801.1E-36218281IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22218276IPR016177DNA-binding domain
PRINTSPR003671.3E-11219230IPR001471AP2/ERF domain
CDDcd000185.53E-15226277No hitNo description
PRINTSPR003671.3E-11241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MYILKVANQR GDPGEYTRYP ATDNYDNQEE RSYTAPQILS QLNQPVEHHV EVTQSPHMFM  60
GYSSSTEMSM VSELTHVVSG QRGSTSDWGS YGAVGLGGAT ITSNFGQAAP GSNTSTPASP  120
PLSAYSSTSG SGLWIGQKRG REEEAGAAAQ LMESLPRVYR GFNDFRSSQG DSSSSGATAT  180
EEVSASTIVI PTTTTPSTTA TPSSEIASLE ETGEQRRRYR GVRQRPWGKW AAEIRDPHKA  240
ARVWLGTFDT AEAAARAYDD AALRFRGNRA KLNFPENVRL LPAQTQNVTA SQVPISHSQL  300
SSHLQLQPIS SPRQQAQRPQ APAPALFQSQ ADIIRDYWEY SQLLQSSGEF HHHQQQQQQQ  360
QQPSSLLQPM FYNPQVASLQ SSALTSLSSS TSVSSLAAIS SGSSPSTFSP SASSFPLLFA  420
GQQLGYFRPP QNQNPASGSD FPVPPWTDSS HNPSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22217278163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.66780.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G065600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302164.10.0ethylene-responsive transcription factor ABR1
TrEMBLB9GT850.0B9GT85_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-21ethylene response factor 110