PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G059100.1
Common NamePOPTR_0002s06000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 326aa    MW: 36581.4 Da    PI: 7.5849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G059100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33182239259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Potri.002G059100.1 182 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSFQDPSLVITTYEGQHNHH 239
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-34166241IPR003657WRKY domain
SuperFamilySSF1182904.45E-29174241IPR003657WRKY domain
PROSITE profilePS5081132.202176241IPR003657WRKY domain
SMARTSM007743.8E-39181240IPR003657WRKY domain
PfamPF031064.4E-26182239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSNEKEDPYN YDPFYYNIQH RTNRPVSVFP FFNDNNLSVY NQQAPTQSLQ GFDDPPYMSF  60
TDCLHGSVDH YNTLSRALNV SCSSSEVISP IEDGSKKTGA GELSAATNEN LPSTPNSSIS  120
NSSSNDGATE EDSGKIKKDK QPKESEDGDG DAKKVSKTKK KEKRQKEPRF AFLTKSEIDN  180
LEDGYRWRKY GQKAVKNSPY PRSYYRCTSQ KCTVKKRVER SFQDPSLVIT TYEGQHNHHC  240
PATLRGNATG MLPPSLLAST SIGQSFPQDL LTRLLPASNQ QGDQTSMFYH SLAPQNQQLQ  300
QHQLYSPDYG LLQDLVPSFI HKQQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-281742421078Probable WRKY transcription factor 4
2lex_A2e-281742421078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G059100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302140.10.0probable WRKY transcription factor 71
TrEMBLB9GT280.0B9GT28_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-53WRKY DNA-binding protein 28