PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G057200.1
Common NamePOPTR_0002s05820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 400aa    MW: 46096.3 Da    PI: 8.6398
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G057200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.62.9e-501202481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         + pGfrFhPtdeelv +yL++kve+k+l++ e ik++diyk++PwdLpk  +a+++ewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+
  Potri.002G057200.1 120 MLPGFRFHPTDEELVGFYLRRKVEKKPLRF-ELIKQIDIYKYDPWDLPKVSNAGDREWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKP 209
                         579*************************99.99***************8888999************************************ PP

                 NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s    +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Potri.002G057200.1 210 IYSVkePHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 248
                         **98545566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-55116274IPR003441NAC domain
PROSITE profilePS5100553.715120275IPR003441NAC domain
PfamPF023655.8E-25122248IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MNAFRMNAFR IELMAGLKLS QKTRYFSRLL PGQIICPRVP PYNQSHALTE QAQSTQAFVE  60
GTVCCLCVCI YNSPQLGEQY SRVIIHGVRE KKERNRYRDM EALSKMSSSD IDHNEDEEVM  120
LPGFRFHPTD EELVGFYLRR KVEKKPLRFE LIKQIDIYKY DPWDLPKVSN AGDREWYFFC  180
IRGRKYRNSI RPNRVTGSGF WKATGIDKPI YSVKEPHECI GLKKSLVYYR GSAGKGTKTD  240
WMMHEFRLPP NGKTTNPKNI AQEAEVWTLC RILKRVPSHK KYVPAAAAKQ HPIIDSNSKT  300
CSFESEISAE QNVSFGDSFG QRNERKPVII DNHVNHERNH FFTGGQYDSI TEAPFTAAFQ  360
NFWNPDVGDD FFANGNWDEL RTVVELGAID PAQAYDYCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-4612228119171NO APICAL MERISTEM PROTEIN
1ut4_B4e-4612228119171NO APICAL MERISTEM PROTEIN
1ut7_A4e-4612228119171NO APICAL MERISTEM PROTEIN
1ut7_B4e-4612228119171NO APICAL MERISTEM PROTEIN
3swm_A4e-4612228122174NAC domain-containing protein 19
3swm_B4e-4612228122174NAC domain-containing protein 19
3swm_C4e-4612228122174NAC domain-containing protein 19
3swm_D4e-4612228122174NAC domain-containing protein 19
3swp_A4e-4612228122174NAC domain-containing protein 19
3swp_B4e-4612228122174NAC domain-containing protein 19
3swp_C4e-4612228122174NAC domain-containing protein 19
3swp_D4e-4612228122174NAC domain-containing protein 19
4dul_A4e-4612228119171NAC domain-containing protein 19
4dul_B4e-4612228119171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G057200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4504373e-71AM450437.2 Vitis vinifera contig VV78X104935.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450661.10.0transcription factor JUNGBRUNNEN 1 isoform X1
SwissprotQ9SK555e-97NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3N7EHA80.0A0A3N7EHA8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-99NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]