PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G054100.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 695aa MW: 77668.9 Da PI: 4.4108 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.2 | 6.9e-14 | 479 | 524 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L Potri.002G054100.4 479 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQL 524 7999**********************8.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.0E-57 | 9 | 191 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.625 | 475 | 524 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-19 | 477 | 543 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.74E-15 | 479 | 529 | No hit | No description |
Pfam | PF00010 | 1.8E-11 | 479 | 524 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-19 | 479 | 543 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-17 | 481 | 530 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MAAPLSSRLQ TMLQAAVQSV QWTYSLFWQM CPQQGILVWG DGYYNGPIKT RKTVQPMEVS 60 TEEASLQRSQ QLRELYDSLS IGETNQPERR PCAALSPEDL TETEWFYLMC VSFSFSPGAG 120 LPGKAYDRKQ HVWLTGANDI DSKTFSRAIL AKSAGVQTVV CIPLLDGVVE FGTTDKVKED 180 LGFIQHVKSF FSDHHHLPPP KPALSEHSTS NPATSSDHPY LYSPPIPPFY VAADPPANAG 240 QMNEDDEEEE EDEEDDEDDE EDQESDSEAE TSREALLEPC QAQNPLQVAV VEPSELMQLE 300 MSEGIRLGSP DDGSNNLDVD FPLINPESLM DHQSRADSFR TESARRWAPM LQDNPFSGSL 360 QPSASGSPTL EDLAQEDTHY SQTVSTILQN QTIELAAEPS LNAYEAYSNQ SAFAKWMNLT 420 DHCLNVPVET TSQWLLKYIL FTVPYLHSKY REENSPKSRD GDATNKFRKG TPQDELSANH 480 VLAERRRREK LNERFIILRS LVPFVTKMDK ASILGDTIEY VKQLLKKIQD LEACNKQMES 540 EQRSRSVDPP QTITTSTSLK EQNNGITVVD RARSVGPGSD KRKMRIVEDY TTGRAQPKSV 600 DSLPSPEPMV DVEPEISVEV SIIESDALIE LKCGYREGLL LDIMQMLREL RIETIAVQSS 660 SNNGIFVGEL RAKVCLYFLP CKNTPSSSSV LLFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-22 | 5 | 192 | 9 | 193 | Transcription factor MYC3 |
4rqw_B | 1e-22 | 5 | 192 | 9 | 193 | Transcription factor MYC3 |
4rs9_A | 1e-22 | 5 | 192 | 9 | 193 | Transcription factor MYC3 |
4yz6_A | 1e-22 | 5 | 192 | 9 | 193 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 483 | 488 | ERRRRE |
2 | 484 | 489 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G054100.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451876.1 | 0.0 | basic helix-loop-helix protein A | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A2K2BDU7 | 0.0 | A0A2K2BDU7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s05510.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-101 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G054100.4 |
Publications ? help Back to Top | |||
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