PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G048000.1
Common NamePOPTR_0002s04880g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 473aa    MW: 52011.3 Da    PI: 8.8666
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G048000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0581103123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Potri.002G048000.1  81 FVCEICNKGFQRDQNLQLHRRGH 103
                         89*******************88 PP
2zf-C2H212.30.00053157179123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Potri.002G048000.1 157 WKCEKCSKIYAVQSDWKAHSKTC 179
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.52E-680103No hitNo description
PROSITE profilePS5015710.94981103IPR007087Zinc finger, C2H2
SMARTSM003550.01781103IPR015880Zinc finger, C2H2-like
PfamPF121717.4E-581103IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355260122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.52E-6152177No hitNo description
SMARTSM00355170157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS GTRIQDFGSL NQLASTISPL QQQQQQQQRT IKKKRNLPGN  60
PDPDAEVIAL SPKTLLTTNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRNSKEIKKK  120
AYVCPEPTCV HHHPSRALGD LTGIKKHYCR KHGEKKWKCE KCSKIYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSAHQL IISQNPNAHA LLLQNPLQTH  240
HPHSLFSTTA HHQISFTSPW DPPHHQNPCS NNPLNPVHIK PETTGHFQIP ASLLQEPPLT  300
MPSHKGLLAP TFQSLSNAAT SQASSHHLSA TALLQKAASV GATQTSVGHS HMTQLDMGEL  360
GSAGQVHVDS VSHVSQGPSY NLNSLATWQK SDRLTRDFLG LTAPECGDHH GHAASNANGS  420
VNVSMNVREI LTYTGGVGFH QQQYNERDHS LLKPHGGFGF AQPSASEAWG DC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35153217367Zinc finger protein JACKDAW
5b3h_F2e-35153217367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G048000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-122AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302090.20.0protein indeterminate-domain 12
SwissprotO227591e-131IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLB9GSI60.0B9GSI6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-128indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]