PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G043500.1
Common NamePOPTR_0002s04440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 352aa    MW: 38916.1 Da    PI: 10.2574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G043500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.2e-32285342359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Potri.002G043500.1 285 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 342
                         99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.7E-18236281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.4E-34271343IPR003657WRKY domain
PROSITE profilePS5081130.641278344IPR003657WRKY domain
SuperFamilySSF1182901.18E-27281343IPR003657WRKY domain
SMARTSM007742.9E-39283343IPR003657WRKY domain
PfamPF031061.2E-27285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEGVEEANRA AVESCHRVIS LLSQPQDQVQ YRNLMVETGE AVFRFKKVVS LLNTGLGHAR  60
VRKLKKLPTP LSQSILLDNS LNRTGHSSKT PQFLQSSSYL ESHPIQELGS SAKNCLSLGT  120
PSLELSSTGK NPLQLGQPTS AANYQFLQLQ QQQLHRLQLQ QQQQQQMKQQ AEMMFRKSNS  180
GISLNFDSSS CTPTLSSTRS FISSLSIDGS VANLEGSAFH LMGPARSSDQ SSQQHKRKCS  240
GRGEDGSVKC GSSGRCHCSK KRKHRVKRSI KVPAISNKLA DIPPDDYSWR KYGQKPIKGS  300
PHPRGYYKCS SMRGCPARKH VERCLEDPSM LIVTYEGEHN HPRIPAQSAN T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-212793461076WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.179320.0bud| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G043500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0297790.0CT029779.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302070.20.0probable WRKY transcription factor 21
SwissprotO043361e-129WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9GS590.0B9GS59_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-119WRKY DNA-binding protein 21