PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G041700.1
Common NamePOPTR_0002s04260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 200aa    MW: 22853.1 Da    PI: 8.7942
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G041700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-054264123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ Fs+   L  H+++H
  Potri.002G041700.1 42 YTCSFCKREFSSAQALGGHMNVH 64
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-43967IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.21E-73968No hitNo description
SMARTSM003550.00364264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4064269IPR007087Zinc finger, C2H2
PfamPF139121.3E-64265IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MCIAMDRNYL QKSTTVKDKW EWNNVIFEGE HSTGISWPKR NYTCSFCKRE FSSAQALGGH  60
MNVHRRDRAR LKQLPSWFFE YPKPSMSNPK PLPYPSSKFS PYPDHTHDHS LLSPFLASFS  120
SPSYPEKKSI VECPQSINST RKISDMRAVV GVGELKKNFV QDGDQLKVSR TSGIISLDLE  180
MRCEDPKEVL DLELRLGCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113764229superman protein
2l1o_A2e-113764229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G041700.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386236.21e-149transcriptional regulator SUPERMAN
TrEMBLA0A2K2BD641e-147A0A2K2BD64_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04260.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.13e-29zinc finger protein 11